Locus 9962

Sequence ID 3R_DroMel_CAF1
Location 26,684,536 – 26,684,644
Length 108
Max. P 0.983973
window15876

overview

Window 6

Location 26,684,536 – 26,684,644
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.30
Mean single sequence MFE -38.72
Consensus MFE -32.80
Energy contribution -34.40
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.85
SVM decision value 1.96
SVM RNA-class probability 0.983973
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26684536 108 + 27905053
GACC------UCA------AAAACUCAACCUCGACCUGGGAAAUCGCGAAGUCGCCAAACACAAACUGUCGCUUUCGGUUUCACGAUUCGGGUUGAGUUGUCGGUGGUUCUGGGCACUUG
((((------.(.------..(((((((((.(((..((.(((((((.((((.((.((.........)).))))))))))))).))..))))))))))))....).))))........... ( -33.90)
>DroSec_CAF1 275273 114 + 1
GACCUCAACCUCA------AAAACUCAACCUCGACCUGGGAAAUCGCGAAGUCGCCAAACAGAAACUGUCGCUUUCGGUUUCUCGAUUCGGGUUGAGUUGUCGGUGGUUCUGGGCACUUG
..((..((((.(.------..(((((((((.(((..((((((((((.((((.((....((((...))))))))))))))))))))..))))))))))))....).))))..))....... ( -42.60)
>DroSim_CAF1 272014 114 + 1
GACCUCAACCUCA------AAAACUCAACCUCGACCUGGGAAAUCGCGAAGUCGCCAAACAGAAACUGUCGCUUUCGGUUUCUCGAUUCGGGCUGAGUUGUCGGUGGUUCUGGGCACUUG
..((..((((.(.------..((((((.((.(((..((((((((((.((((.((....((((...))))))))))))))))))))..))))).))))))....).))))..))....... ( -38.40)
>DroEre_CAF1 291225 114 + 1
GACCUCAACCUCA------AAAACUCAACCUCGACCUGGGAAAUCGCGAAGUCGCCAAACACAAACUGUCGCUUUCGGUUUCUCGAUUCGGGUUGAGUUGUCGGUGGUUCUGGGCACUUU
..((..((((.(.------..(((((((((.(((..((((((((((.((((.((.((.........)).))))))))))))))))..))))))))))))....).))))..))....... ( -41.80)
>DroYak_CAF1 280187 120 + 1
GACCUCAACCUCAACCUGAAAACCUCAACCUCGACCUGGGAAAUCGCGAAGUCGCCAAACACAAACUGUCGCUUUCGGUUUCUCGAUUCGGGUUGAGUUGUCGCUGGUUCUGGCCACUUG
........((..(((((((....(((((((.(((..((((((((((.((((.((.((.........)).))))))))))))))))..))))))))))...)))..))))..))....... ( -36.90)
>consensus
GACCUCAACCUCA______AAAACUCAACCUCGACCUGGGAAAUCGCGAAGUCGCCAAACACAAACUGUCGCUUUCGGUUUCUCGAUUCGGGUUGAGUUGUCGGUGGUUCUGGGCACUUG
..((..((((.(.........(((((((((.(((..((((((((((.((((.((.((.........)).))))))))))))))))..))))))))))))....).))))..))....... (-32.80 = -34.40 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:48 2006