Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,683,943 – 26,684,059 |
Length | 116 |
Max. P | 0.518453 |
Location | 26,683,943 – 26,684,059 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.08 |
Mean single sequence MFE | -37.14 |
Consensus MFE | -33.72 |
Energy contribution | -33.60 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.11 |
Structure conservation index | 0.91 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518453 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26683943 116 - 27905053 GUUGGACAUUGCGUGACCCGG---UAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGCCCGGAAGUUGAAAAGUUUCGAACUUUUC-GAAACCAGGAAAA (((((.(((((.(((.(((((---.(((....)))....)))))....))).))))).)))))..((((.((((.....(....)..(((((((.....)))))))-)))).)))).... ( -36.20) >DroSec_CAF1 274673 116 - 1 GUUGGACAUUGCGUGACCCGG---UAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGACCGGAAGUUGAAAAGUUUCGAACUUUUC-GAAACCAGGAAAA (((((.(((((.(((.(((((---.(((....)))....)))))....))).))))).)))))..((((.((((.....(....)..(((((((.....)))))))-)))).)))).... ( -36.20) >DroSim_CAF1 271414 116 - 1 GUUGGACAUUGCGUGACCUGG---UAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGACCGGAAGUUGAAAAGUUUCGAACUUUUC-GAAACCAGGAAAA ................(((((---(.....(((((((((.((((......))))))))..)))))...((((((......))))))((((((((.....)))))))-)..)))))).... ( -35.60) >DroEre_CAF1 290639 120 - 1 GUUGGACAUCGCGUGACCCCGUCGUAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGACCGGAAGUUGAAAAGUUCCGAACUUUUCCAAAACCAGGAAAA (((((.(((((.(((.(((((....(((....))).....)))))...))).))))).)))))..(((((((((......)))))..(((((((.....)))))))......)))).... ( -38.70) >DroYak_CAF1 279622 117 - 1 GUUGGACAUCGCGUGACCCCG---CAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGACCGGAAGUUGAAAAGUUUCGAACUUUUCCGAGGCCAGGAAAA ...((.(((((.(((.(((((---....((((....)))))))))...))).))))).))((((....((((((......)))))).(((((((.....)))))))...))))....... ( -39.00) >consensus GUUGGACAUUGCGUGACCCGG___UAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGACCGGAAGUUGAAAAGUUUCGAACUUUUC_GAAACCAGGAAAA (((((.(((((.(((.(((((....(((....)))....)))))....))).))))).)))))..((((.((((.....(....)..(((((((.....))))))).)))).)))).... (-33.72 = -33.60 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:47 2006