Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,683,289 – 26,683,439 |
Length | 150 |
Max. P | 0.999096 |
Location | 26,683,289 – 26,683,401 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.88 |
Mean single sequence MFE | -37.48 |
Consensus MFE | -37.26 |
Energy contribution | -37.26 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.99 |
SVM decision value | 3.37 |
SVM RNA-class probability | 0.999096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26683289 112 - 27905053 CAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCUUCGAGGACAUUGUUCGCCGGA--------UCGGCGGCUCAGCGGAUUUGCCCUUAA ..............(((((((((((....((((((((...(((....)))..))))))))......(((........((((((..--------.))))))))))))))..)))))).... ( -36.50) >DroSec_CAF1 274019 112 - 1 CAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCUUCGAGGACAUUGUUCGCCGGA--------UCGGCGGCUCAGCGGAUUUGCCCUUAA ..............(((((((((((....((((((((...(((....)))..))))))))......(((........((((((..--------.))))))))))))))..)))))).... ( -36.50) >DroSim_CAF1 270761 112 - 1 CAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCUUCGAGGACAUUGUUCGCCGGA--------UCGGCGGCUCAGCGGAUUUGCCCUUAA ..............(((((((((((....((((((((...(((....)))..))))))))......(((........((((((..--------.))))))))))))))..)))))).... ( -36.50) >DroEre_CAF1 289948 120 - 1 CAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCUUCGAGGACAUUGUUCGCCGGAUCGCCAGAUCGGCGGCUCAGCGGAUUUGCCCUUAA ..(((((........(((....)))....((((((((...(((....)))..))))))))...)))))((.((..((((((.(..(((((.....)))))..).)))))).)).)).... ( -41.40) >DroYak_CAF1 278930 112 - 1 CAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCAUCGAGGACAUUGUUCGCCGGA--------UCGGCGGCUCAGCGGAUUUGCCCUUAA ..............(((((((((((....((((((((...(((....)))..))))))))......(((........((((((..--------.))))))))))))))..)))))).... ( -36.50) >consensus CAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCUUCGAGGACAUUGUUCGCCGGA________UCGGCGGCUCAGCGGAUUUGCCCUUAA ..............(((((((((((....((((((((...(((....)))..))))))))......(((........(((((((.........)))))))))))))))..)))))).... (-37.26 = -37.26 + 0.00)
Location | 26,683,321 – 26,683,439 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.13 |
Mean single sequence MFE | -33.34 |
Consensus MFE | -27.62 |
Energy contribution | -27.78 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.70 |
Structure conservation index | 0.83 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26683321 118 - 27905053 CCAGCAAACUGCAUUCCUCGAACAAAGGAC--UCGUCGAUCAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCUUCGAGGACAUUGUUCG ...((.....))......(((((((.(..(--(((..((................(((....)))....((((((((...(((....)))..)))))))).))..))))..).))))))) ( -34.80) >DroSec_CAF1 274051 118 - 1 CCAUCAAACUGCAUCCCUCGAACAAAGGAC--UCGUCGAUCAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCUUCGAGGACAUUGUUCG ..................(((((((.(..(--(((..((................(((....)))....((((((((...(((....)))..)))))))).))..))))..).))))))) ( -33.30) >DroSim_CAF1 270793 118 - 1 CCAGCAAACUGCAUCCCUCGAACAAAGGAC--UCGUCGAUCAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCUUCGAGGACAUUGUUCG ...((.....))......(((((((.(..(--(((..((................(((....)))....((((((((...(((....)))..)))))))).))..))))..).))))))) ( -34.80) >DroEre_CAF1 289988 118 - 1 CCAGCGAACUGCAUCCCUCGUUCAAAGGAC--UCGUCGAUCAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCUUCGAGGACAUUGUUCG ....(((((......(((((....(((((.--...(((.....))).........(((....)))....((((((((...(((....)))..)))))))))))))))))).....))))) ( -30.90) >DroYak_CAF1 278962 120 - 1 CCAGCGAACUCCAUCCCUCGAACAAAGGAGGAACGUCGAUCAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCAUCGAGGACAUUGUUCG ....(((((......((((((......(((.....(((.....))).........(((....))).)))((((((((...(((....)))..))))))))....)))))).....))))) ( -32.90) >consensus CCAGCAAACUGCAUCCCUCGAACAAAGGAC__UCGUCGAUCAUCGAAAUAAUGCGGGCAAUUGCUACUUUCUUGAGGUUAAACGCAAGUUGCUCUCAAGAUUCUUCGAGGACAUUGUUCG (((((((.((((((.(((.......))).......(((.....)))....))))))....)))))....((((((((...(((....)))..))))))))........)).......... (-27.62 = -27.78 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:46 2006