| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,681,828 – 26,681,934 |
| Length | 106 |
| Max. P | 0.688955 |
| Location | 26,681,828 – 26,681,934 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.10 |
| Mean single sequence MFE | -35.76 |
| Consensus MFE | -25.24 |
| Energy contribution | -25.64 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26681828 106 + 27905053 UAAAUCCGCGAGCUUUACCUGCCGAAAGGGGGUGGGAACUGGCUCAUCUGGGAGAAAUCUCAAGUGGCUGGCGGUCCGAA--------AAUUCUGGGGAAAUUCGGAACAAGU------A .....((((.((((((((((.((....)))))))))........((..(((((....)))))..))))).))))((((((--------..(((....))).))))))......------. ( -39.90) >DroSec_CAF1 272499 106 + 1 UAAAUCCGCGAGCUUUACCUGUCGAAAGGGGGUGGGAACUGGCUCAUCUGACAGAAAUCUCAAGUGGCUGGCGAUCCGAA--------AUUUCUGGGGAAAUUCGGAACAAGU------A ......(((.((((((((((.((....)))))))))........((..(((.(....).)))..))))).))).((((((--------.((((....))))))))))......------. ( -31.40) >DroSim_CAF1 269255 106 + 1 UAAAUCCGCGAGCUUUACCUGUCGAAAGGGGGUGGGAACUGGCUCAUCUGGGAGAAAUCUCAAGUGGCUGGCGGUCCGAA--------AUUUCUGGGGAAAUUCGGAACAAGU------A .....((((.((((((((((.((....)))))))))........((..(((((....)))))..))))).))))((((((--------.((((....))))))))))......------. ( -39.20) >DroEre_CAF1 288404 106 + 1 UAAAUCCGCGAGCUUUACCUGCCGAAAGGGGGUGGGAACUGGCUCAUCUGGAAGGAAACUCAAGUGGCUGGCGAUCCGAA--------AAUUCUGGGGAAAUUCGGAACAAGU------A ......(((.((((...((..((....))(((((((......))))))))).((....)).....)))).))).((((((--------..(((....))).))))))......------. ( -33.50) >DroYak_CAF1 277388 109 + 1 UAAAUCCGCGAGCUUUACCUGUGGAAAGGGGGUGGGAACUGGCUCAUC-----------UCAAGUGGCUGGCGAUCCGAUCCUAUCCCGAUUCUGGGGAAAUUCGGAACAAGUAGGAAUA ....(((((.((((...(((......)))(((((((......))))))-----------).....)))).))(.(((((.....(((((....)))))....))))).).....)))... ( -34.80) >consensus UAAAUCCGCGAGCUUUACCUGUCGAAAGGGGGUGGGAACUGGCUCAUCUGGGAGAAAUCUCAAGUGGCUGGCGAUCCGAA________AAUUCUGGGGAAAUUCGGAACAAGU______A ......(((.((((...(((......)))(((((((......)))))))................)))).))).((((((..........(((....))).))))))............. (-25.24 = -25.64 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:39 2006