Locus 9956

Sequence ID 3R_DroMel_CAF1
Location 26,681,146 – 26,681,266
Length 120
Max. P 0.990103
window15865

overview

Window 5

Location 26,681,146 – 26,681,266
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.75
Mean single sequence MFE -32.56
Consensus MFE -29.78
Energy contribution -30.38
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.11
Structure conservation index 0.91
SVM decision value 2.20
SVM RNA-class probability 0.990103
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26681146 120 - 27905053
GUCCUGGUGCCUGAGUCUAUUAAAAGUCUAAAGGCAGAUAAUAAAGGGCCAUUAGGACUUAAAAGGGCUCAACAGCGCAGGGAAAUAGAAAUAUCACAAUUUGUUACCCCGGGUUCAACA
..((((((((.(((((((.....((((((.(((((............))).)).))))))....)))))))...)))).(((.((((((..........)))))).)))))))....... ( -32.60)
>DroSec_CAF1 271743 120 - 1
GUCCUGGUGCCUGAGUCUAUUAAAAGUCUAAAGGCAGAUAAUAAAGGGCCAUUAGGACUUAAAAGGGCUCAACAGCGCAGGGAAAUAGAAAUAUCACAAUUUGUUACCCCGGGUUCAACA
..((((((((.(((((((.....((((((.(((((............))).)).))))))....)))))))...)))).(((.((((((..........)))))).)))))))....... ( -32.60)
>DroSim_CAF1 268509 120 - 1
GUCCUGGUGCCUGAGUCUAUUAAAAGUCUAAAGGCAGAUAAUAAAGGGCCAUUAGGACUUAAAAGGGCUCAACAGCGCAGGGAAAUAGAAAUAUCACAAUUUGUUACCCCGGGUUCAACA
..((((((((.(((((((.....((((((.(((((............))).)).))))))....)))))))...)))).(((.((((((..........)))))).)))))))....... ( -32.60)
>DroEre_CAF1 287645 120 - 1
GUACUGGUGCCUGAGUCUAUUAAAAGUCUAAAGGCAGAUAAUAAAGGGCCAUUAGGACUUAAAAGGGCUCAACAGCGCAGGGAAAUAGAAAUAUCACAAUUUGUUACCCCGCGCUCAACA
(((....))).(((((((.....((((((.(((((............))).)).))))))....)))))))..(((((.(((.((((((..........)))))).))).)))))..... ( -32.90)
>DroYak_CAF1 276747 120 - 1
GUGCUGGUGCCUGAGUCUAUUAAAAGUCUAAAGGCAGAUAAUAAAGGGCCAUUAGGACUUAAAAGGGCUCAACAGCGCAGGGAAAUAGAAAUAUCACAAUUUGUUACCCCGGGUUCAACA
((((((.....(((((((.....((((((.(((((............))).)).))))))....))))))).)))))).(((.((((((..........)))))).)))........... ( -32.10)
>consensus
GUCCUGGUGCCUGAGUCUAUUAAAAGUCUAAAGGCAGAUAAUAAAGGGCCAUUAGGACUUAAAAGGGCUCAACAGCGCAGGGAAAUAGAAAUAUCACAAUUUGUUACCCCGGGUUCAACA
..((((((((.(((((((.....((((((.(((((............))).)).))))))....)))))))...)))).(((.((((((..........)))))).)))))))....... (-29.78 = -30.38 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:38 2006