Locus 9953

Sequence ID 3R_DroMel_CAF1
Location 26,670,650 – 26,670,758
Length 108
Max. P 0.813569
window15860

overview

Window 0

Location 26,670,650 – 26,670,758
Length 108
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 77.17
Mean single sequence MFE -21.00
Consensus MFE -12.14
Energy contribution -13.70
Covariance contribution 1.56
Combinations/Pair 1.18
Mean z-score -2.03
Structure conservation index 0.58
SVM decision value 0.66
SVM RNA-class probability 0.813569
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26670650 108 - 27905053
AAGUCAUGUUAAUUUAAAAACUAGCAUGCUUUUAGGCAUACUUGAUUUCAAUACAGCUACAAGUUUUGACACAAAUCGUGUA---AAAUUAAUGUAUAAAUCUAUAUGAGA
...((((((..(((((.....(((((((((....)))))..(((....)))....))))..(((((((.(((.....)))))---)))))......)))))..)))))).. ( -20.40)
>DroSec_CAF1 261276 108 - 1
AAGACAUGUUAAUUUAAAAACUAGUAUGCUUUUAGGCAUACUUGAUUUCAAUACAGCUACAAGUUUUGACACAAAUCGUGUA---AAAUUAACGUAUAAAUCGACAUGAGA
....(((((..(((((....(.((((((((....)))))))).).................(((((((.(((.....)))))---)))))......)))))..)))))... ( -24.70)
>DroSim_CAF1 257948 108 - 1
AAGACAUGUUAACUUAAAAACUAGUAUGCUUUUAGGCAUACUUGAUUUCAAUACAACUGCAAGUUUUGACACAAAUCGUGUA---AAAUUAAUGUAUAAAUCGGUAUGAGC
....((((..............((((((((....))))))))((((((..(((((......(((((((.(((.....)))))---)))))..))))))))))).))))... ( -19.60)
>DroEre_CAF1 274541 92 - 1
AAAACAAUUUC----------UAGCAUGCUUUUAGGCAUGCUUGAUAUCACUCC---------UUUUUACACAAAACGGCUGCGUAGAUCAAUGUAUAAAAACAUUUGAGA
.........((----------.((((((((....)))))))).)).....(((.---------..(((((.((.......)).)))))..(((((......))))).))). ( -19.30)
>consensus
AAGACAUGUUAAUUUAAAAACUAGCAUGCUUUUAGGCAUACUUGAUUUCAAUACAGCUACAAGUUUUGACACAAAUCGUGUA___AAAUUAAUGUAUAAAUCGAUAUGAGA
....(((((..(((((......((((((((....))))))))..........................((((.....))))...............)))))..)))))... (-12.14 = -13.70 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:33 2006