| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,668,508 – 26,668,615 |
| Length | 107 |
| Max. P | 0.647411 |
| Location | 26,668,508 – 26,668,615 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.32 |
| Mean single sequence MFE | -31.11 |
| Consensus MFE | -23.83 |
| Energy contribution | -25.98 |
| Covariance contribution | 2.15 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26668508 107 - 27905053 ACGACACGCAGACGCCUAAGAAGCAGCUUCUUUCGAGGACGGAGGAUGGAGGCAUCCAAGGUGGAAAG-------AAGGCGACCGCAAGCAAGGUCGUUCAGCGACCUUCACAU .......((.(.(((((.....((..(((((((((....))))))).))..)).(((.....)))...-------.))))).).))..(.(((((((.....)))))))).... ( -34.90) >DroSec_CAF1 259084 107 - 1 ACGACACGCAAACGCCUAAGAAGCAGCUUCGUUCGAGGACGGAGGAUGGAGGCAUCCAAGGUGGAAAG-------AAGGCGACCGCAAGCAAGGUCGCUCAGCGACCUUCACAU ......(((...(((((.........(((((((....)))))))..((((....))))))))).....-------..(((((((........)))))))..))).......... ( -36.30) >DroSim_CAF1 255725 107 - 1 ACGACACGCAGACGCCUAAGAAGCAGCUUCUUUCGAGGACGGAGGAUGGAGGCAUCCAAGGUGGAAAG-------AAGGCGACCGCAAGCAAGGUCGUUCAGCGACCUUCACAU .......((.(.(((((.....((..(((((((((....))))))).))..)).(((.....)))...-------.))))).).))..(.(((((((.....)))))))).... ( -34.90) >DroEre_CAF1 269677 97 - 1 ACGACACGCAGACGCCAAAGAAGCAGCUUCUU---U----CGAGGACGGAGGCAUCCAAGGUGGAAAG-------AAGGCGACCGCAAGCAAGGUCGUUCAGCGACCUUCA--- .......((.(.((((.........((((((.---(----(...)).)))))).(((.....)))...-------..)))).).))..(.(((((((.....)))))))).--- ( -31.00) >DroWil_CAF1 327963 81 - 1 ACGACACGCAGACGCCAAACAUAUAU--UCC--------------------CCAUUUACGGUGC-----------AAGUCGACCGCAAGCAAGGUCGUUCAGCGACCUUCAGAU .((((..(((..((............--...--------------------.......)).)))-----------..)))).......(.(((((((.....)))))))).... ( -17.45) >DroYak_CAF1 263073 110 - 1 ACGACACGCAGACGCCUAAGAAGCAGCUUCUUCUGU----AGAGGAUGGUGGCAUCCAAGGUGGAAACUUCUUUCCAACCGACCGCAAGCAAGGUCGUUCAGCGACCUUCACAU .......((....((((..((.((.((((((((...----.))))).))).)).))..))))(((((....)))))........))..(.(((((((.....)))))))).... ( -32.10) >consensus ACGACACGCAGACGCCUAAGAAGCAGCUUCUUUCGA____GGAGGAUGGAGGCAUCCAAGGUGGAAAG_______AAGGCGACCGCAAGCAAGGUCGUUCAGCGACCUUCACAU ......(((...(((((..((.((..(((((((((....))))))).))..)).))..)))))..............(((((((........)))))))..))).......... (-23.83 = -25.98 + 2.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:32 2006