Locus 9951

Sequence ID 3R_DroMel_CAF1
Location 26,668,216 – 26,668,314
Length 98
Max. P 0.864130
window15858

overview

Window 8

Location 26,668,216 – 26,668,314
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.36
Mean single sequence MFE -29.95
Consensus MFE -20.01
Energy contribution -21.65
Covariance contribution 1.64
Combinations/Pair 1.22
Mean z-score -2.37
Structure conservation index 0.67
SVM decision value 0.84
SVM RNA-class probability 0.864130
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26668216 98 - 27905053
AUGCCACUGCUUCUCUGUCUUUCAGCUUCCGCGUUUCACUCGGAAGACUGAUCGCCCAGCAGGUUUGGGCUGUCGGGGCAUUAUCAUAAUCCCAAAAC
(((((.((((...........((((((((((.(.....).)))))).))))..((((((.....)))))).).))))))))................. ( -31.40)
>DroSec_CAF1 258792 98 - 1
AUGCCACUGCUUCUCUGUCUUUCUGCUUCCGCGUUUCACUCGGAAGACUGAUAGCCCAGCAGGUUUUGGCUGUCAGGGCAUUAUCAUUAUCCCAAAAC
(((((....................((((((.(.....).)))))).(((((((((...........))))))))))))))................. ( -29.10)
>DroSim_CAF1 255433 98 - 1
AUGCCACUGCUUCUCUGUCUUUAUGCUUCCGCGUUUCACUCGGAAGACUGAUAGCCCAGCAGGUUUGGGCUGUCAGGGCAUUAUCAUUAUCCCAAAAC
(((((....................((((((.(.....).)))))).((((((((((((.....)))))))))))))))))................. ( -35.50)
>DroEre_CAF1 269394 98 - 1
AUUCCAGUGCCAUUCUGUCUUUCAGCUUCCGCGUUUCACUCGGAAGAGUGAUAGCCCAGCAGGUUUGGGCUGUCAGGACAUUAUCAUUAUCCCAGCAC
......((((.....(((((.....((((((.(.....).))))))..(((((((((((.....)))))))))))))))).((....)).....)))) ( -31.20)
>DroYak_CAF1 262760 98 - 1
AUUCCAGUGCUCCUCUGUCUCUCAGCUUCCGCGUUUCACUCGCAAGAGUGAUAGCCCAGCAGGUUUGGGCUGUCGGGACAUUAUCGUUAUCCCAGCAC
......(((((.............((....))((..(((((....))))((((((((((.....)))))))))))..))..............))))) ( -34.20)
>DroAna_CAF1 265808 92 - 1
AAUCCAGUUCUGUUUGACUUUUCGGUUUCCGCGUUUCACUC-CAAGACUGAUAACCCGGCAGGUUUAAACUGCCAGUGAAUAAUUGCG-----ACUAA
..(((((((....((.(((..(((((((..(.(.....).)-..)))))))......(((((.......)))))))).)).))))).)-----).... ( -18.30)
>consensus
AUGCCACUGCUUCUCUGUCUUUCAGCUUCCGCGUUUCACUCGGAAGACUGAUAGCCCAGCAGGUUUGGGCUGUCAGGGCAUUAUCAUUAUCCCAAAAC
...............((((......((((((.(.....).)))))).((((((((((((.....)))))))))))))))).................. (-20.01 = -21.65 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:31 2006