Locus 9950

Sequence ID 3R_DroMel_CAF1
Location 26,664,048 – 26,664,156
Length 108
Max. P 0.589230
window15857

overview

Window 7

Location 26,664,048 – 26,664,156
Length 108
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 78.00
Mean single sequence MFE -38.45
Consensus MFE -25.31
Energy contribution -25.40
Covariance contribution 0.09
Combinations/Pair 1.41
Mean z-score -1.24
Structure conservation index 0.66
SVM decision value 0.11
SVM RNA-class probability 0.589230
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26664048 108 + 27905053
---CUUUCCAGGUGGCAGGCAGAGUGAGCUCAUCGCGGGCAACGAGUUCCUCAAGCUGUUCCUCGAUCAUGAUGACCAGCAACGAAGUCUCCACAGCGGUGAACAGGAUUU
---...(((..((((.((((.(((.((((((......(....))))))))))..((((.((.((......)).)).))))......))))))))....(....).)))... ( -32.70)
>DroPse_CAF1 317866 103 + 1
-------CCACGGGGC-GGCAGAGUGAGCUCAUCGCCGGCAAUGAGUUCCUCAAGCUGUUCCUGGACCACGACGAGCAGCAGCGCAGCCUGCACAGCAGCGAGCAGGAGUU
-------(((.(((((-(((.(((.((((((((.(....).)))))))))))..))))))))))).....(((..((......))..(((((.(......).))))).))) ( -39.90)
>DroWil_CAF1 322781 105 + 1
---CUCGCCGAUGGGUCGACAUAGUGAGCUCAUUGCUGGCAAUGAGUUCCUCAAGCUAUUUCUCGAUCAUGAUGAACAGCAGCGUAAUCUGCACAGCAGCGA---GGAUUU
---(((((.(.((((((((.(((((((((((((((....)))))))))).....)))))...))))))..........((((......)))).)).).))))---)..... ( -37.20)
>DroMoj_CAF1 321444 108 + 1
ACCCGUAUCAGCGGGCAGGCAGAGUGAGCUCAUUGCGGGCAAUGAGUUUCUCAAGUUGUUCCUCGAUCACGACGAACAGCAGCGCAGCCUGCACAGCGAUGA---GGAGCU
..((.((((.((..((((((.(((.((((((((((....)))))))))))))..(((((((.(((....))).)))))))......))))))...)))))).---)).... ( -49.40)
>DroAna_CAF1 261698 108 + 1
---CUUGCCAGGUAGCCGGCAAAGCGAGCUUAUUGCGGGUAACGAGUUCCUUAAGCUGUUCCUCGAUCAUGAUGACCAGCAACGCAGUCUCCAUAGCGGAGAGCAGGACUU
---........((.(((.((((((....))..)))).))).))((((.(((...((((.((.((......)).)).))))...((..(((((.....)))))))))))))) ( -31.60)
>DroPer_CAF1 317301 103 + 1
-------CCACGGGGC-GGCAGAGUGAGCUCAUCGCCGGCAAUGAGUUCCUCAAGCUGUUCCUGGACCACGACGAGCAGCAGCGCAGCCUGCACAGCAGCGAGCAGGAGUU
-------(((.(((((-(((.(((.((((((((.(....).)))))))))))..))))))))))).....(((..((......))..(((((.(......).))))).))) ( -39.90)
>consensus
___CUU_CCAGGGGGC_GGCAGAGUGAGCUCAUCGCGGGCAAUGAGUUCCUCAAGCUGUUCCUCGAUCACGACGAACAGCAGCGCAGCCUGCACAGCAGCGAGCAGGAGUU
..............((.(((.(((.((((((((.(....).)))))))))))..(((((((.(((....))).)))))))......))).))................... (-25.31 = -25.40 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:30 2006