Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,174,867 – 3,175,008 |
Length | 141 |
Max. P | 0.650047 |
Location | 3,174,867 – 3,174,983 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.50 |
Mean single sequence MFE | -27.20 |
Consensus MFE | -14.45 |
Energy contribution | -14.70 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.20 |
Mean z-score | -2.01 |
Structure conservation index | 0.53 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3174867 116 + 27905053 CAGGUCUAAAAACUUUUGAAUUGUAGCUUGCAAAUUUUUAAGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAAUGAAAGGAGA----UCAACGAUCGAGUUAGUUCUGGUUAAGUCUUAC .(((.((...((((...((((((.((((((........))))))..((((((.((((((((..(........)..))))))))----)))))).......)))))).)))).)).))).. ( -28.60) >DroSec_CAF1 119 106 + 1 CAGGUCUAAAAACUUUUGAAUUGUAUCUUUCAAAUUUUUAAGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAAUAAGAGGAGA----UCAACGAUCGAGUUAGA----------CCUUAC .(((((((.(((..((((((........))))))..)))..((((.((((((.(((((((((((........)))))))))))----))))))...))))))))----------)))... ( -32.30) >DroSim_CAF1 6106 97 + 1 CAGGUCUAAAAACUUUUGAAUUGUAUCUUGCAAAUUUUUUAGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAGUGAAAGGAGA----UCAACGAUCG-------------------UUAC .(((.(((((((..((((............)))).)))))))))).((((((.((((((((..(........)..))))))))----))))))....-------------------.... ( -22.50) >DroEre_CAF1 1000 120 + 1 GAAGUCUAGAAAUUUUUGAAUGGUAGCUUGCAGAUUCUCAAGCUUGCGUUGAGUUUCAUUUUGUAGGCUCUGAAUAAAGGAGAGAAAUCAUAGGUCGAGUUAAGCUAAGUCAAAUCUUAA ..............(((((....((((((...((((((((((((((((.((.....))...)))))))).)))........((....)).......)))))))))))..)))))...... ( -25.40) >consensus CAGGUCUAAAAACUUUUGAAUUGUAGCUUGCAAAUUUUUAAGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAAUGAAAGGAGA____UCAACGAUCGAGUUAG___________UCUUAC .(((.((.((((..((((............)))).)))).))))).((((((.(((((((((((........)))))))))))....))))))........................... (-14.45 = -14.70 + 0.25)
Location | 3,174,907 – 3,175,008 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 66.57 |
Mean single sequence MFE | -19.89 |
Consensus MFE | -13.30 |
Energy contribution | -14.63 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.09 |
Mean z-score | -1.00 |
Structure conservation index | 0.67 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3174907 101 + 27905053 AGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAAUGAAAGGAGA----UCAACGAUCGAGUUAGUUCUGGUUAAGUCUUACAUAAAAUA----------AAAUCGAGACAAAAACU----- (((((.((((((.((((((((..(........)..))))))))----))))))...)))))............(((((..........----------.....))))).......----- ( -22.76) >DroSec_CAF1 159 91 + 1 AGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAAUAAGAGGAGA----UCAACGAUCGAGUUAGA----------CCUUACAUAAAUUA----------AAAAAGGAACAAAAACU----- (((((.((((((.(((((((((((........)))))))))))----))))))...)))))...----------((((..........----------...))))..........----- ( -22.02) >DroEre_CAF1 1040 120 + 1 AGCUUGCGUUGAGUUUCAUUUUGUAGGCUCUGAAUAAAGGAGAGAAAUCAUAGGUCGAGUUAAGCUAAGUCAAAUCUUAAAUACAAUAUUUGUUAAAAAAAAAUGAACGAAAAUAAUUGC ((((((..((((.((..(((((.....((((.......)))).)))))...)).))))..))))))......................((((((...........))))))......... ( -14.90) >consensus AGCUUCCGUUGAGUUUCCUUUUGUAGGUUCUAAUAAAAGGAGA____UCAACGAUCGAGUUAGA____GU_AA_UCUUACAUAAAAUA__________AAAAAGGAACAAAAACU_____ (((((.((((((.(((((((((((........)))))))))))....))))))...)))))........................................................... (-13.30 = -14.63 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:54 2006