Locus 9946

Sequence ID	3R_DroMel_CAF1
Location	26,632,303 – 26,632,396
Length	93
Max. P	0.893180

overview

Window 1

Location	26,632,303 – 26,632,396
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	87.73
Mean single sequence MFE	-25.62
Consensus MFE	-18.28
Energy contribution	-18.76
Covariance contribution	0.48
Combinations/Pair	1.15
Mean z-score	-2.48
Structure conservation index	0.71
SVM decision value	0.98
SVM RNA-class probability	0.893180
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26632303 93 - 27905053
AUCGAUACCUGAUGUGGUUGCCAGACCAAGUACAGCUGCUCCUCCCUAGAUCUCUGUCUAUCGAUAUCGGUCUAUCGAUAUGUGAACAUAUCU
...((((.(((((((((((....)))).((.((((..(.((.......)).).))))))....)))))))..))))((((((....)))))). ( -23.00)
>DroSec_CAF1 223943 93 - 1
AUCGAUAUCUGAUGUGGUUGCCAGACCAAGUACAGCUGCUCCUCCCUAGAACCUCGUCUAUCGAUAUCGGUCAAUCGAUAUGUGAACAUAUCU
(((((((((.((((.((((.(.((....((((....)))).....)).))))).))))....))))))))).....((((((....)))))). ( -26.00)
>DroSim_CAF1 219756 93 - 1
ACCGAUAUCUGAUGUGGUUGCCAGACCAAGUACAGCUGCUCCUCCCUAGAACCUCGUCUAUCGAUAUCGGUCAAUCGAUAUGUGAACAUAUCU
(((((((((.((((.((((.(.((....((((....)))).....)).))))).))))....))))))))).....((((((....)))))). ( -28.60)
>DroEre_CAF1 232898 92 - 1
AUCGAUAUAUGCUAUGGUUGCCAGAU-AAGCCCAGCGACUCCUCCCUAGACCCCUGUCAAUCGAUAUCGGUCUAUCGAUAUGUGAACAUAUCU
...((((..((((..((((.......-.)))).))))...........((((..((((....))))..))))))))((((((....)))))). ( -24.50)
>DroYak_CAF1 227054 92 - 1
AUCGAUAUGCGAAGUGGCUGCCAGAU-UAGCUCAGCUACUCCUCCCUAGACCCCUGCCAAUCGAUAUCGGUCUAUCGAUAUGUGAACAUAUCU
((((((((.(((((((((((..((..-...))))))))))......(((....)))....))))))))))).....((((((....)))))). ( -26.00)
>consensus
AUCGAUAUCUGAUGUGGUUGCCAGACCAAGUACAGCUGCUCCUCCCUAGAACCCUGUCUAUCGAUAUCGGUCUAUCGAUAUGUGAACAUAUCU
((((((((.(((((((((((............))))))).........((......)).)))))))))))).....((((((....)))))). (-18.28 = -18.76 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:25 2006