Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,608,631 – 26,608,726 |
Length | 95 |
Max. P | 0.775611 |
Location | 26,608,631 – 26,608,726 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 75.99 |
Mean single sequence MFE | -17.16 |
Consensus MFE | -9.38 |
Energy contribution | -10.18 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.10 |
Mean z-score | -1.79 |
Structure conservation index | 0.55 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26608631 95 + 27905053 UUUUUGAUGCGUUCAAUUUGUUGCCAAACAAA--UCAAAGCACAAA--------CAAAAACGCUCCCCGAAAAACCGA--AAAU-----UUGAUUAGCAUCAGCUGUUGAAA ...(((((((..((((((((((....))))))--....(((.....--------.......)))..............--....-----))))...)))))))......... ( -15.20) >DroVir_CAF1 245440 81 + 1 CAUUUGAUGCGUUCAAUUUGUUGCCAAACAAA--UCAAAG-ACAAA--------CAAACGCAUUUC---------------GUU-----UUGAUUAGCAUCAGCUGCUGAAA ((.(((((((..((((((((((....))))))--).....-.....--------.(((((.....)---------------)))-----))))...))))))).))...... ( -16.70) >DroGri_CAF1 388709 88 + 1 CAUUUGAUGCGUUCAAUUUGUUGCCAAACAAAAUGCAAAG-ACAAA--------CAAACGCAUUCA---------------GCUUUCUGUUGAUUAGCAUCAGCUGUUGAAA .......((((((...((((((((..........)))...-)))))--------..))))))((((---------------((.....((((((....)))))).)))))). ( -19.10) >DroEre_CAF1 206837 95 + 1 CAUUUGAUGUGUUCAAUUUGUUGCCAAACAAA--UCAAAGCACAAA--------CAAAAACGCUCCCCGAAAAAUCGA--AAAU-----UUGAUUAGCAUCAGCUGUUGAAA ..(((((((((((..(((((((....))))))--)...)))))...--------......((.....))....)))))--)..(-----(..((.(((....)))))..)). ( -16.40) >DroMoj_CAF1 258641 81 + 1 CAUUUGAUGCGUUCAAUUUGUUGCCAAACAAA--UCAAAG-ACAAA--------CAAACGCAUUCG---------------GGU-----GUGAUUAGCAUCAGCUGCUGAAA (((((((((((((...((((((..........--.....)-)))))--------..)))))).)))---------------)))-----)...((((((.....)))))).. ( -19.96) >DroAna_CAF1 199492 99 + 1 CAUGUGAUGCGUUCAAUUUGUUGCCAAACAAA--UCAAAUCACAAAAGAACAAACAAA-AGGC---CC--AAAACCAAAAAAAA-----UUGAUUAGCAUCAGCUGUUGAAA ....((((((..((((((((((....)))...--........................-.((.---..--....)).....)))-----))))...)))))).......... ( -15.60) >consensus CAUUUGAUGCGUUCAAUUUGUUGCCAAACAAA__UCAAAG_ACAAA________CAAACACACUCC_______________AAU_____UUGAUUAGCAUCAGCUGUUGAAA ((.(((((((..((((((((((....))))))...................................((......))............))))...))))))).))...... ( -9.38 = -10.18 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:20 2006