Locus 9940

Sequence ID 3R_DroMel_CAF1
Location 26,605,500 – 26,605,596
Length 96
Max. P 0.614707
window15844

overview

Window 4

Location 26,605,500 – 26,605,596
Length 96
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.25
Mean single sequence MFE -21.77
Consensus MFE -14.00
Energy contribution -14.42
Covariance contribution 0.42
Combinations/Pair 1.14
Mean z-score -1.66
Structure conservation index 0.64
SVM decision value 0.17
SVM RNA-class probability 0.614707
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26605500 96 + 27905053
UUUGAGCUUGUCGCUUUUUGUUAUUUUUGUUUACGCAUUUCGUCAGGCGACAGGUGCGCUUC-UAUAUCUAU----CAGAUACAAUAUAGACAA-GUCUAUG
..((..((((((.....(((.............(((((((.(((....))))))))))....-..((((...----..)))))))....)))))-)..)).. ( -21.20)
>DroPse_CAF1 244013 95 + 1
UUUGAGCUUGUCGCUUGUUGUUAUUUUUGUUUACGCAUUUCGUCAGGCGACAGGUGCGUUUC-UAUAUCUAU----CAGAUAUG-UACAUCUAU-AUAUCUG
...(.((((((((((((.((.......(((....)))...)).)))))))))))).).....-.........----((((((((-((....)))-))))))) ( -27.20)
>DroEre_CAF1 203664 96 + 1
UUUGAGCUUGUCGCAUUUUGUUAUUUUUGUUUACGCAUUUCGUCAGGCGACAGGUGCGCUUU-UAUAUCUAU----CAGAUACCAUAUAGACGA-GUCUAUG
..((..((((((.....................(((((((.(((....))))))))))....-..((((...----..)))).......)))))-)..)).. ( -20.50)
>DroWil_CAF1 229233 88 + 1
GCAAAGCAUGUCGUUUGUUGUUAUUUCUGUUUACGCAUUUCAUAAGGCGACAGGUGCGUUUUUUAUAUGUAUGUACCAAAAAUA-UAUA-------------
........((((((((..((.......(((....)))...))..))))))))(((((((...........))))))).......-....------------- ( -15.50)
>DroYak_CAF1 199255 97 + 1
UUUGAGCUUGUCGCAUUUUGUUAUUUUUGUUUACGCAUUUCGUCAGGCGACAGGUGCGCUUC-UAUAUCUAU----CGGAUACCAUAUAGACGACAUCUAUG
....((..(((((....................(((((((.(((....))))))))))..((-(((((....----........)))))))))))).))... ( -19.00)
>DroPer_CAF1 242318 95 + 1
UUUGAGCUUGUCGCUUGUUGUUAUUUUUGUUUACGCAUUUCGUCAGGCGACAGGUGCGUUUC-UAUAUCUAU----CAGAUAUG-UACAUCUAU-AUAUCUG
...(.((((((((((((.((.......(((....)))...)).)))))))))))).).....-.........----((((((((-((....)))-))))))) ( -27.20)
>consensus
UUUGAGCUUGUCGCUUGUUGUUAUUUUUGUUUACGCAUUUCGUCAGGCGACAGGUGCGCUUC_UAUAUCUAU____CAGAUACA_UAUAGACAA_AUCUAUG
.....(((((((((((..((.......(((....)))...))..)))))))))))..........(((((.......))))).................... (-14.00 = -14.42 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:19 2006