Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,174,347 – 3,174,467 |
Length | 120 |
Max. P | 0.667405 |
Location | 3,174,347 – 3,174,467 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -25.83 |
Energy contribution | -25.45 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.11 |
Mean z-score | -1.95 |
Structure conservation index | 0.80 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3174347 120 - 27905053 AGUAAGCGGCCAAACCGCAAGUUGAAGUAAUUUCUACUUAGCCCCAACUAACUACAGGCAGCAUGAGAGUGUUGGAAAAAACGCGGAGAGGAAACUUCGGAACGCCUCAGAAAUUAAAAU .....(((.((...((((.((((((((((.....))))).....))))).........((((((....))))))........)))).(((....))).))..)))............... ( -29.60) >DroSim_CAF1 5584 120 - 1 AGUGAGCGGCCAAACCGCAAGUUGAAGUAAUUUCUACUUAGCCACAACUAACUACGGGUAGCAUGGAAGUGUUGUAAAAAACGCGGAGAGGAAACUUCGGAACGCCUCAGAAAUUAAAAU .....((((.....)))).........((((((((......(((...(((.(....).)))..)))..(((((......)))))...((((...(....)....)))))))))))).... ( -29.00) >DroEre_CAF1 542 120 - 1 AGUGAGCGGCCAAGCCGCAAGUUGAAGUAAUUUCUACUUAGUCCCAACUAACUACGGGCAGCGUGGAAGUGUUGGAAAAAACGCGGAGAGGAAACUUCGGAACGCCUCAGAAAUUAAAAU .....(((((...))))).........((((((((......(((.......(((((.....)))))..(((((......))))))))((((...(....)....)))))))))))).... ( -34.70) >DroYak_CAF1 6112 120 - 1 AGCGAGCGGCCAAGCCGCAAGUUGAAGUAAUUUCUACUUAGCCCCAACUAAGUACAGCCAGCAUGGAAGUGUUGGAAAAAACACGGAGAGGAAACUUCGGAACGCCUCAGAAAUUAAAAU (((..(((((...)))))..)))....((((((((((((((......))))))....(((((((....)))))))............((((...(....)....)))))))))))).... ( -35.90) >consensus AGUGAGCGGCCAAACCGCAAGUUGAAGUAAUUUCUACUUAGCCCCAACUAACUACAGGCAGCAUGGAAGUGUUGGAAAAAACGCGGAGAGGAAACUUCGGAACGCCUCAGAAAUUAAAAU .....((((.....)))).........((((((((..((((......))))....((((.........(((((......)))))...(((....)))......)))).)))))))).... (-25.83 = -25.45 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:52 2006