Locus 9939

Sequence ID 3R_DroMel_CAF1
Location 26,604,631 – 26,604,726
Length 95
Max. P 0.589322
window15843

overview

Window 3

Location 26,604,631 – 26,604,726
Length 95
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 85.08
Mean single sequence MFE -20.52
Consensus MFE -13.50
Energy contribution -13.50
Covariance contribution 0.00
Combinations/Pair 1.05
Mean z-score -1.69
Structure conservation index 0.66
SVM decision value 0.11
SVM RNA-class probability 0.589322
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26604631 95 - 27905053
CGGAUAAACAUUUGCCGAAAUUUCUGUUGCUGCU------UCUGCCUGCGUUUCGUUUUCGAUUUUCAUUCGCCAACGCAGCGACAAAUCAAAUUUAAUUG
(((.(((....))))))((((((.(((((((((.------...((.((.(..(((....)))..).))...))....)))))))))....))))))..... ( -19.50)
>DroSec_CAF1 188105 101 - 1
CGGGUAAACAUUUGCCCAAAUUUCUGUUGCUGUUUCUGUUUCUGUCUGUGUUUCGUUUUCGAUUUUCAUUCGCUAACGCAGCGACAAAUCAAAUUUAAUUG
.((((((....))))))((((((.(((((((((....(((...((..(((..(((....)))....)))..)).))))))))))))....))))))..... ( -24.80)
>DroSim_CAF1 191429 95 - 1
CGGGUAAACAUUUGCCCAAAUUUCUGUUGCUGUU------UCUGUCUGCGUUUCGUUUUCGAUUUUCAUUCGCCAACGCAGCGACAAAUCAAAUUUAAUUG
.((((((....))))))((((((.(((((((((.------...((..(((..(((....)))........)))..)))))))))))....))))))..... ( -23.50)
>DroYak_CAF1 198388 81 - 1
--------------CCGAAAUUUCUGUUUCUGCUG------CUGUCUGUGUUUCGUUUUCGAUUUUCAUUCGCCAACGCAGCGACAAAUCAAAUUUAAUUG
--------------..(((((....)))))(((((------(.((..(((..(((....)))....)))..))....)))))).................. ( -14.30)
>consensus
CGGGUAAACAUUUGCCCAAAUUUCUGUUGCUGCU______UCUGUCUGCGUUUCGUUUUCGAUUUUCAUUCGCCAACGCAGCGACAAAUCAAAUUUAAUUG
.................((((((.(((((((((..............(.....)(((..(((.......)))..))))))))))))....))))))..... (-13.50 = -13.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:18 2006