Locus 9938

Sequence ID 3R_DroMel_CAF1
Location 26,602,328 – 26,602,423
Length 95
Max. P 0.965268
window15842

overview

Window 2

Location 26,602,328 – 26,602,423
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 76.64
Mean single sequence MFE -24.30
Consensus MFE -11.99
Energy contribution -13.22
Covariance contribution 1.22
Combinations/Pair 1.12
Mean z-score -2.52
Structure conservation index 0.49
SVM decision value 1.58
SVM RNA-class probability 0.965268
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26602328 95 - 27905053
AACUGGCCAACUUUAUUAGCUUUUGGCCAGGC-UGGUAAUCAUCGCAGCUUAGGUAAAUAUUAAUAACGGCCAGCAGUUGUGAAAAGUGCAAAAAA
...(((((....(((((((..((((.((((((-(((.......).)))))).))))))..))))))).)))))(((.((.....)).)))...... ( -26.20)
>DroGri_CAF1 379500 84 - 1
-ACUU-GCAGCUUUAUUAGCUUUUGAACCC--UUUGC--UUUUGACCGCUUAGGUAAAUAUUAAUAACC---AGCAGU---CAAAAAAAAGAAAGA
-.(((-..((((.....))))........(--(((..--(((((((.(((..(((...........)))---))).))---))))).)))).))). ( -17.00)
>DroSec_CAF1 185756 94 - 1
AACUGGCCAACUUUAUUAGCUUUUGGCCAGGC-UGGCAAUCAUCGCGGCUUAGGUAAAUAUUAAUAACGGCCAGCAGUCGUGAAAAGUGCAAA-AA
..((((((((((.....))...))))))))..-..(((....((((((((..(((..............)))...))))))))....)))...-.. ( -28.54)
>DroSim_CAF1 189079 94 - 1
AACUGGCCAACUUUAUUAGCUUUUGGCCAGGC-UGGCAAUCAUCGCGGCUUAGGUAAAUAUUAAUAACGGCCAGCAGUCGUGAAAAGUGCAAA-AA
..((((((((((.....))...))))))))..-..(((....((((((((..(((..............)))...))))))))....)))...-.. ( -28.54)
>DroEre_CAF1 200445 86 - 1
AGUUGGCCAACUUUAUUAGCUUUUUGCCAGGC-UGGCAAUCAUCGCGGCUUAGGUAAAUAUUAAUAACGGCCAG--------AAAAGUAUGAA-AA
..((((((....(((((((...((((((((((-((.(.......))))))).))))))..))))))).))))))--------...........-.. ( -24.00)
>DroYak_CAF1 196093 79 - 1
AGUUGGCCAACUUUAUUAGCUUUUUGCCAGG-----------------CUUAGGUAAAUAUUAAUAACGGCCAGCAGUCGUGAAAAGCACCAAAAA
.(((((((....(((((((...((((((...-----------------....))))))..))))))).)))))))....(((.....)))...... ( -21.50)
>consensus
AACUGGCCAACUUUAUUAGCUUUUGGCCAGGC_UGGCAAUCAUCGCGGCUUAGGUAAAUAUUAAUAACGGCCAGCAGUCGUGAAAAGUACAAA_AA
..((((((....(((((((..(((.(((((((...((.......)).)))).))))))..))))))).))))))...................... (-11.99 = -13.22 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:17 2006