| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,600,181 – 26,600,298 |
| Length | 117 |
| Max. P | 0.561267 |
| Location | 26,600,181 – 26,600,298 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.04 |
| Mean single sequence MFE | -42.02 |
| Consensus MFE | -28.78 |
| Energy contribution | -28.45 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26600181 117 + 27905053 GCAACUGCUGCCGCCGCAACUGCCCGGCAGCAACAGCAGCGUGGGCAGCAACUCCGCCUACGAUUUGGAUCUCAGCGCCCCACGCUCCACAUCCAGUCCGGGCUCCACCACCGGCGA ((...((((((((..((....)).))))))))...))..(((((((.........)))))))...(((((...((((.....))))....)))))(.((((.........))))).. ( -44.30) >DroVir_CAF1 235251 114 + 1 ---GCUGUUGCCACCGCCACAACCCGGCAGCAACAGCAGCGUCGGCAGCAAUUCCGCUUAUGAUUUGGACUUGAGUGCUCCCCGUUCCACCUCCAGCCCGGGUUCCACAACGGGCGA ---((((((((..(((........)))..))))))))((((..((((.(((.((((.........)))).)))..))).)..)))).........(((((..........))))).. ( -38.60) >DroSim_CAF1 186993 112 + 1 -----UGCUGCCGCCGCAACUGCCCGGCAGCAACAGCAGCGUGGGCAGCAACUCCGCCUACGACCUGGACCUCAGCGCCCCGCGCUCCACCUCCAGUCCGGGCUCCACCACCGGCGA -----......(((((...(((((((((.((....)).)).))))))).......((((..(((.((((....(((((...))))).....))))))).))))........))))). ( -44.70) >DroWil_CAF1 222820 117 + 1 ACAAUUGCUGCCACCUCAAUUGCCUGGCAGUAACAGCAGUGUGGGCAGCAAUUCGGCCUAUGAUUUGGAUCUAAGUGCACCAAGAUCAACAUCUAGUCCGGGCUCAACCACAGGCGA ....(((((((((...........)))))))))..((..(((((..(((...((((.(((.(((...(((((..(....)..)))))...)))))).)))))))...))))).)).. ( -37.40) >DroMoj_CAF1 247968 114 + 1 ---GCUGCUGCCACCGCCGCAGCCCGGCAGCAACAGCAGCGUCGGCAGCAACUCCGCCUACGACCUGGACUUGAGUGCACCGCGCUCCACCUCCAGCCCGGGCUCCACGACGGGCGA ---(((((((...(.((((.....)))).)...)))))))((((...((......))...)))).((((...((((((...))))))....))))(((((..........))))).. ( -46.50) >DroAna_CAF1 191437 117 + 1 GCCCCUGUUGCCGCCCCAGCUACCAGGUAGCAACAGCAGCGUGGGCAGCAACUCCGCCUACGAUCUGGAUCUGAGUGCACCACGAUCCACCUCCAGUCCCGGCUCCACCACCGGAGA ((..(((((((..((..........))..)))))))..))((((((.........))))))((..((((((((.(....))).))))))..))...((((((........)))).)) ( -40.60) >consensus ___ACUGCUGCCACCGCAACUGCCCGGCAGCAACAGCAGCGUGGGCAGCAACUCCGCCUACGAUCUGGACCUGAGUGCACCACGCUCCACCUCCAGUCCGGGCUCCACCACCGGCGA ........((((.........((((((..((....))..(((((((.........)))))))..(((((....((((.....)))).....))))).)))))).........)))). (-28.78 = -28.45 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:16 2006