Locus 9936

Sequence ID 3R_DroMel_CAF1
Location 26,592,645 – 26,592,763
Length 118
Max. P 0.666360
window15840

overview

Window 0

Location 26,592,645 – 26,592,763
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 82.09
Mean single sequence MFE -36.46
Consensus MFE -26.10
Energy contribution -27.82
Covariance contribution 1.72
Combinations/Pair 1.15
Mean z-score -1.70
Structure conservation index 0.72
SVM decision value 0.28
SVM RNA-class probability 0.666360
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26592645 118 - 27905053
GAGAGGUGGCUAUGCUAUGCAAUGCAGGGAA-UAAUGCCAUUAUUCAAGAUCGACUGGCCGACUUUCAUGUGUGAAGAGCGUGAUAUGACCAAUAGAUAUAAGAAAUCGAAUGAUCUGC
(((..(((((....((.(((...))).))..-....)))))..))).((((((..(((.((....((((((.......))))))..)).)))...(((.......)))...)))))).. ( -26.10)
>DroSec_CAF1 176292 117 - 1
GAGAGGAGGCUAUGCCCCG-AGGGCAGGGAA-UAAUGCCAUUAUUCAAGAUCGACUGGCCGUCUCUCAUGCGUGAAGAGCGUGAUAUGGCCAAGACAUAUAAGAAAUCGAAUGAUCUGC
(((.((.(((...))))).-..((((.....-...))))....))).((((((..(((((((...((((((.......)))))).)))))))..........(....)...)))))).. ( -34.90)
>DroSim_CAF1 179644 117 - 1
GAGAGGAGGCUGUGCCUCG-AGGGCAGGGAA-UAAUGCCAUUAUUCAAGAUCGACUGGCCGUCUUUCAUGCGUGAAGAGCGUGAUAUGGCCAAGAUAUAUAAGAAAUCGAAUGAUCUGC
..((((((((...))))).-..((((.....-...))))....))).((((((..(((((((...((((((.......)))))).))))))).(((.........)))...)))))).. ( -38.40)
>DroEre_CAF1 190534 113 - 1
GAGAGGUGGCUGUGCCCCG-AAGGCAGGGAAGUGUUGCCAUUAUUCACGAUCGGCUGGCCGACUUUCAUGCGUGAACAGCGUGAUAUGGCCAAGAUAUGUACGAAAUCGAACGG-----
(((..(((((.(..((((.-......)))..)..).)))))..)))...(((...((((((....(((((((....).))))))..)))))).))).(((.((....)).))).----- ( -37.10)
>DroYak_CAF1 186017 103 - 1
GAGAGGUGGCUAUGGCU---ACGGC-------UAUGGCCAUCAUUCAAGAUCGACUGGCCGUCUUUCAUGCGUGAACAGCGUGAUAUGGCCGAGAUAU------AAUCGAACGACCUGC
(((.((((((((((((.---...))-------)))))))))).))).((.(((...((((((...(((((((....).)))))).))))))((.....------..))...))).)).. ( -45.80)
>consensus
GAGAGGUGGCUAUGCCCCG_AAGGCAGGGAA_UAAUGCCAUUAUUCAAGAUCGACUGGCCGUCUUUCAUGCGUGAAGAGCGUGAUAUGGCCAAGAUAUAUAAGAAAUCGAAUGAUCUGC
(((.((((((..((((......))))..........)))))).))).((((((..(((((((...((((((.......)))))).)))))))..........(....)...)))))).. (-26.10 = -27.82 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:15 2006