Locus 9934

Sequence ID 3R_DroMel_CAF1
Location 26,584,060 – 26,584,156
Length 96
Max. P 0.922333
window15837

overview

Window 7

Location 26,584,060 – 26,584,156
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 74.38
Mean single sequence MFE -21.02
Consensus MFE -9.63
Energy contribution -10.56
Covariance contribution 0.93
Combinations/Pair 1.08
Mean z-score -2.06
Structure conservation index 0.46
SVM decision value 1.15
SVM RNA-class probability 0.922333
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26584060 96 + 27905053
CAAAACCUCACUCGAGAUACAAUUGUAUCUUUGAAAU-UCAAACUGAUUUGUAUGCCCUUGCUUUGGGUAGUUCGCUUCAG-UUCGGAAUGUUUUCUG
.(((((.(((...(((((((....)))))))))).((-((.((((((..((..(((((.......)))))...))..))))-))..)))))))))... ( -25.50)
>DroSec_CAF1 167982 96 + 1
CAAAACCUCACCCGAGAUACAAUUGUAUCUUUGAAUU-UCAAACUGAUUCGUGUGCCCUUACUUUGGGUAGUUUGCCUCAC-UUUUAAUUGUUUUCUG
.(((((..(((..(((((((....))))))).(((((-.......))))))))(((((.......)))))...........-........)))))... ( -18.00)
>DroSim_CAF1 169895 96 + 1
CAAAACCUCACCCGAGAUACAAUUGUAUCUUUGAAUU-UCAAACUGAUUUGUAUGCCCUUGCUUUGGGUAGUUCGCCUCAC-UUUUAAUUGUUUUCUG
.(((((.(((...(((((((....))))))))))...-......(((..((..(((((.......)))))...))..))).-........)))))... ( -17.10)
>DroEre_CAF1 182078 97 + 1
CAAAACCUCACUCGAGAUACAAUUGUAUCUUUGAAUU-UCAAGCUGAUUCGUAUGCCCUUGCUUUGGGCAGUUCGCAUCAGCCUGGAAAUACUUUCUA
.......(((...(((((((....)))))))))).((-(((.((((((.((..(((((.......)))))...)).)))))).))))).......... ( -32.00)
>DroAna_CAF1 174986 78 + 1
CGAAACCUUAUUUGAGAUACGAUUGUAUCUAUUAGGUUGGAAACAGAUUUUUAG----UAAAAUU-GGA---------AGC-UUUUAAUUGUU-----
...(((((......((((((....))))))...)))))(....)..........----...((((-(((---------...-.)))))))...----- ( -12.50)
>consensus
CAAAACCUCACUCGAGAUACAAUUGUAUCUUUGAAUU_UCAAACUGAUUUGUAUGCCCUUGCUUUGGGUAGUUCGCCUCAC_UUUUAAUUGUUUUCUG
.............(((((((....)))))))......................(((((.......)))))............................ ( -9.63 = -10.56 +   0.93)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:12 2006