| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,580,404 – 26,580,516 |
| Length | 112 |
| Max. P | 0.694070 |
| Location | 26,580,404 – 26,580,516 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.40 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -7.46 |
| Energy contribution | -9.78 |
| Covariance contribution | 2.32 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.694070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26580404 112 - 27905053 AAACGAUUAAGACCAACAAGGGCACACUGAGAAAAAACAGUUUGCUUUGGUUCAUAAACAAUGGUA-AAAUCGUUUGGCAAUUGAAAAAUU-CAUUUUAUAAUUGCUAUCAACU ((((((((...((((...((((((.((((........)))).)))))).(((....)))..)))).-.))))))))((((((((.((((..-..)))).))))))))....... ( -28.40) >DroSec_CAF1 164312 112 - 1 AAACGAUGAAGACCAACAAGGGCACACUGCGGA-AAACAGUUUGCUUAGUUUGAUAAACAAUGGAAUACAUCUUUUGGCAAUUGAAAAAUU-CAUUUUAUAGUUGCUAUGAACU ....((((.(..(((....(((((.((((....-...)))).))))).(((.....)))..)))..).))))...(((((((((.((((..-..)))).)))))))))...... ( -23.20) >DroSim_CAF1 166200 112 - 1 AAACGAUGAAGACCAACAAGGACACACUGCGGA-AAACAGUUUGCUUAGUGUUAUAAGCAAUGGAAUAAAUCUUUUGGCAAUUAAAAAAUU-CCUCUUAUAGUUGCUAUGAACU ....(((.....(((..........((((....-...))))(((((((......)))))))))).....)))...(((((((((.((....-....)).)))))))))...... ( -19.70) >DroEre_CAF1 178482 89 - 1 AAACGAUGAAGACCAACAAGGGCACACUGCGGA-AAACAGUUUGCGUAGUUC-CUAAAAAA------ACA-UAUUUAGUACUUAAAAAAUGUCCAAUU---------------- ...................(((((.((((((.(-((....))).))))))..-(((((...------...-..)))))...........)))))....---------------- ( -15.40) >DroYak_CAF1 173553 104 - 1 AAACGAUGAAGACCAACAAGGGCACACUGCGGA-AAACAGUUAGCAUAGUUC-UUGAAAAA------ACA-AACUUGGCAAUUAAAAAAUU-CCUCUUAUGGUAGUUAUCAACC ....(((((..((((.(((((((....(((...-.........)))..))))-))).....------...-.....((.((((....))))-)).....))))..))))).... ( -20.30) >consensus AAACGAUGAAGACCAACAAGGGCACACUGCGGA_AAACAGUUUGCUUAGUUU_AUAAACAAUGG_A_ACAUCAUUUGGCAAUUAAAAAAUU_CCUCUUAUAGUUGCUAUCAACU ....((((....((.....))(((.((((........)))).))).......................))))...(((((((((.((.........)).)))))))))...... ( -7.46 = -9.78 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:10 2006