| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,579,087 – 26,579,185 |
| Length | 98 |
| Max. P | 0.572220 |
| Location | 26,579,087 – 26,579,185 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 73.20 |
| Mean single sequence MFE | -20.58 |
| Consensus MFE | -8.66 |
| Energy contribution | -9.14 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26579087 98 - 27905053 GGUAAAUCGAAGAGGAAAGCCUUAACCCAUUAAAUAGGACAUUCGUAUUGUUAAUGGGAUGGAACCAGAAUGUUUACAAUAAAGAAAGUUAGCCUAUA .((((((....((((....))))..(((((((((((.(.....).)))..)))))))).............))))))..................... ( -17.10) >DroSec_CAF1 162968 88 - 1 GGGAAAUCGAAGAGGAAAUCCUUAACCCAUUAAAUACGACAUUCGUAAUAUUGAUGGG----------AAUGUUUAAAAUGAAGAAAGUUAUCGUAUA .......(((.((((....))))..((((((((.((((.....))))...))))))))----------.......................))).... ( -18.10) >DroSim_CAF1 164871 88 - 1 GGGAAAUCGAAGAGGAAAGCCUUAACCCAUUAAAUACGACAUUCGUAAUAUUGAUGGG----------AAUGCUUAAAAUGAAGAAAGUUAUCGUAUA .......(((.((((....))))..((((((((.((((.....))))...))))))))----------.......................))).... ( -17.30) >DroEre_CAF1 177118 98 - 1 GGGAAAUCGAUGGCGAAGGCCUUAACCCAUUAAAGGCGGCAUUCGGCAUGUUAAUGGUAUGCACUCAGAAUGUUGAAAACUGAUAGAGUUGAUUUCUG .(((((((((((((....)))............((.((((((((.(((((.......))))).....))))))))....))......)))))))))). ( -29.50) >DroYak_CAF1 172151 98 - 1 GGGAAAUCGAAGGGAAAAGCCUUAACCCAUUAAAGGAGGCUUUUGGCAUGGUAAUGGGAUGAAGCCAGAUUGUUAAAGGCUAAGAAAAUUAACUUAGA (((......((((......))))..))).........(((((((((((((((...........))))...)))))))))))................. ( -20.90) >consensus GGGAAAUCGAAGAGGAAAGCCUUAACCCAUUAAAUACGACAUUCGUAAUGUUAAUGGGAUG_A__CAGAAUGUUUAAAAUGAAGAAAGUUAACGUAUA ...........((((....))))..((((((((.((((.....))))...))))))))........................................ ( -8.66 = -9.14 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:06 2006