Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,174,193 – 3,174,307 |
Length | 114 |
Max. P | 0.908697 |
Location | 3,174,193 – 3,174,307 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.58 |
Mean single sequence MFE | -42.75 |
Consensus MFE | -38.38 |
Energy contribution | -38.38 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.03 |
Mean z-score | -2.32 |
Structure conservation index | 0.90 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3174193 114 + 27905053 GAAUGGAAAAAGUAAUGGAAACAAGAAGUGGUUGCAGCGGUGCGGUGUUGGCCCAAACGGAAGUUGGCGCUGAUGGCCGGGCUUUGG------CUUUGGCCAACUUCAAGAUGCUGCUCC ....(((...((((.((....)).((((((((((.((((((.((((((..((((((.(....))))).))..)).)))).)))...)------)).))))).)))))....))))..))) ( -42.90) >DroSim_CAF1 5430 114 + 1 GAAUGGAAAAAGUAAUGGAAACAAGAAGUGGUUGCAGCGGUGCGGUGUUGGCCCAAACGGAAGUUGGCGCUGAUGGCCGGGCUUUGG------CUUUGGCCAACUUCAAGAUGCUGCUCC ....(((...((((.((....)).((((((((((.((((((.((((((..((((((.(....))))).))..)).)))).)))...)------)).))))).)))))....))))..))) ( -42.90) >DroEre_CAF1 388 114 + 1 GAAUGGAAAAAGUAAUGGAAACAAGAAGUGGUUGCAGCGGUGCGGUGUUGGCCCAAACGGAAGUUGCUGCUGAUGGCCGGGCUUUGG------CUUUGGCCAACUUCAAGAUGCUGCUCC ....(((...((((.((....)).(((((....(((((((.((.......)))).(((....))))))))...(((((((((....)------).))))))))))))....))))..))) ( -41.50) >DroYak_CAF1 5952 120 + 1 GAAUGGAAAAAGUAAUGGAAACAAGAAGUGGUUGCAGCGGUGCGGUGUUGGCCCAAACGGAAGUUGGCGCUGAUGGCCGGGCUUUGGCUUUGGCUUUGGCCAACUUCAAGAUGCUGCUCC ....(((........((....))..........((((((((.((((((..((((((.(....))))).))..)).)))).))(((((..(((((....)))))..))))).))))))))) ( -43.70) >consensus GAAUGGAAAAAGUAAUGGAAACAAGAAGUGGUUGCAGCGGUGCGGUGUUGGCCCAAACGGAAGUUGGCGCUGAUGGCCGGGCUUUGG______CUUUGGCCAACUUCAAGAUGCUGCUCC ....(((...((((.((....)).(((((((((((((((.((.(((....)))))(((....)))..))))).))))).((((..(((....)))..)))).)))))....))))..))) (-38.38 = -38.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:51 2006