| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,571,286 – 26,571,377 |
| Length | 91 |
| Max. P | 0.510100 |
| Location | 26,571,286 – 26,571,377 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 81.59 |
| Mean single sequence MFE | -26.25 |
| Consensus MFE | -17.63 |
| Energy contribution | -17.63 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510100 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26571286 91 + 27905053 GUGUUAAUUGGCACUCAUAUCAGCAGCAUUCCUUGUUCUGCUGACAUAUUCAAGGUGAAAUGAGUCCAAUUACUGGGUAUAC--------------AGAUUAUAA ....(((((((.((((((.(((((((.((.....)).)))))))....(((.....))))))))))))))))(((......)--------------))....... ( -27.10) >DroSec_CAF1 155140 105 + 1 AUGUUAAUUGGCACUCUUAUCAUCAGCAUUCGUGGUUCUGGUCACAUAUUCAAGGUGAAAUGAGUCCAGUUAAUGGGUAUACCGGGAGUCAUCUCCUGAUUAUGA ..(((((((((.((((...(((((.......((((......))))........)))))...)))))))))))))........((((((....))))))....... ( -28.96) >DroSim_CAF1 157025 105 + 1 AUGAUAAUUGGCACUCUUAUCAUCAGCAUUCGUUGUUCUGCUGGCAUAUUCAAGGUGAAAUGAGUCCAGUUAAUGGGUAUACCGCGAGUCAUCUACUGAUUGUGA ....(((((((.((((...(((((((((.....)))).((....)).......)))))...)))))))))))..........(((.(((((.....)))))))). ( -22.70) >consensus AUGUUAAUUGGCACUCUUAUCAUCAGCAUUCGUUGUUCUGCUGACAUAUUCAAGGUGAAAUGAGUCCAGUUAAUGGGUAUACCG_GAGUCAUCU_CUGAUUAUGA ....(((((((.((((...(((((((.((.....)).)))))))....(((.....)))..)))))))))))................................. (-17.63 = -17.63 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:04 2006