Locus 9927

Sequence ID 3R_DroMel_CAF1
Location 26,568,149 – 26,568,242
Length 93
Max. P 0.575560
window15826

overview

Window 6

Location 26,568,149 – 26,568,242
Length 93
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 78.57
Mean single sequence MFE -24.77
Consensus MFE -17.19
Energy contribution -17.80
Covariance contribution 0.61
Combinations/Pair 1.10
Mean z-score -1.13
Structure conservation index 0.69
SVM decision value 0.08
SVM RNA-class probability 0.575560
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26568149 93 - 27905053
-------GGC-CAAGGCAAAUUGGCC-CCAUAUGAGAGUGCAUCUGGUUGGGUGACAAUAUUUUGCAGCGAAUUAUGACAGCUCCUUUGUCUUUCCG------GGGAA
-------(((-(((......))))))-((....(((((.(((...((((((....).(((.((((...)))).)))..)))))....))))))))..------.)).. ( -23.50)
>DroPse_CAF1 196812 85 - 1
-------AGUGAAAGGCAAAUUGGCUGCCAUAUGA--GUGCCGUUUGUUGGGUGACAAUAUUUUGCAGCGAAUUAUGACAGCUCUUUUGUCUUG--------------
-------.....((((((((..(((((.((((...--.(((.((.(((((.....)))))....)).)))...)))).)))))..)))))))).-------------- ( -27.30)
>DroWil_CAF1 175472 91 - 1
UCGUUUUGGC-CAAAGCAAAUUGGCC-UCAUAUGA--GUGCAAUU-UUUGGGUGACAAUAUUUUGCAGCGAAUUAUGACAGCUCUUUUGUCUUAGC------------
((((...(((-(((......))))))-........--.(((((..-(...(....)...)..))))))))).....(((((.....))))).....------------ ( -22.40)
>DroYak_CAF1 160800 99 - 1
-------GGC-CAAGGCAAAUUGGCC-CCAUAUGAGAGUGCAUCUGGUUGGGUGACAAUAUUUUGCAGCGAAUUAUGACAGCUCCUUUGUCUUGCCGAAAUGGGCAAA
-------(((-(((......))))))-........((((...(((((((.(.((.(((....))))).).))))).))..)))).......(((((......))))). ( -27.90)
>DroAna_CAF1 158318 87 - 1
-------GGC-CAAGGCGAAUUGGCC-UCAUAUGA--GUGCAGC---UUGGGUGACAAUAUUUUGCAGCGAAUUAUGACAGCUUCUUUGUCUUUUCG------GG-AA
-------(((-(((......))))))-........--.(((((.---...(....)......))))).((((....(((((.....)))))..))))------..-.. ( -22.10)
>DroPer_CAF1 194670 85 - 1
-------AGUGAAAGGCAAAUUGGCUGCCAUAUGA--GUGCCGUUCGUAGGGUGACAAUAUUUUGCAGCGAAUUAUGACAGCUCUUUUGUCUUG--------------
-------.....((((((((..(((((.((((...--.(((.((......(....)........)).)))...)))).)))))..)))))))).-------------- ( -25.44)
>consensus
_______GGC_CAAGGCAAAUUGGCC_CCAUAUGA__GUGCAGCU_GUUGGGUGACAAUAUUUUGCAGCGAAUUAUGACAGCUCCUUUGUCUUG_C____________
............((((((((..(((...((((......(((((.......(....)......)))))......))))...)))..))))))))............... (-17.19 = -17.80 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:03 2006