| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,563,173 – 26,563,279 |
| Length | 106 |
| Max. P | 0.630140 |
| Location | 26,563,173 – 26,563,279 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 74.77 |
| Mean single sequence MFE | -38.12 |
| Consensus MFE | -11.05 |
| Energy contribution | -13.21 |
| Covariance contribution | 2.17 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.29 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26563173 106 + 27905053 GCAGCCGAGUGCAAACACAG-CCAUGGCCAUGGGCAUGAAUACGGCAGUGGAUCGGGCAUCGUGGUCCAUGGCCAUGGAAGUGGACAUGGAUGG----CUGGAUGGCAGCC .((((((.(((....(((..-((((((((((((((((((...((((....).)))....)))).))))))))))))))..)))..)))...)))----))).......... ( -47.10) >DroSec_CAF1 147159 106 + 1 GCAGCCGAGUGCAAACACAG-CCAUGGCCAUGGGCAUGAAUACGGCAGUGGAUCGGGCGUCGUGGUCCAUGGCCAUGGAAGUGGACAUGGAUGG----CUGGAUGGCAGCC .((((((.(((....(((..-((((((((((((((((((...((((....).)))....)))).))))))))))))))..)))..)))...)))----))).......... ( -48.20) >DroSim_CAF1 149020 106 + 1 GCAGCCGAGUGCAAACACAG-CCAUGGCCAUGGGCAUGAAUACGGCAGUGGAUCGGGCAUCGUGGUCCAUGGCCAUGGAAGUGGACAUGGAUGG----CUGGAUGGCAGCC .((((((.(((....(((..-((((((((((((((((((...((((....).)))....)))).))))))))))))))..)))..)))...)))----))).......... ( -47.10) >DroEre_CAF1 160982 101 + 1 GCAACCAAAUGCAAACACAG-CCAUGGCCAUGGGCAUGAAUGUGGCAGUGGA-----CAUGGAA----GUGGACAUGGAAGUGGACAUGGAUGUGGACAUGGAUGGCAGCC ((..(((..(((...((((.-.((((.(....).))))..)))))))(((..-----((((...----(((..(((....)))..)))...))))..)))...)))..)). ( -31.30) >DroYak_CAF1 155613 94 + 1 GCAGCCAAAUGCAAACACAGGCCAUGGCCAUGGGCAUGAAUAUGCCACUGGAUCG-GCAUCGCA----------------GUGGACAUGGAAGUGGACAUGGAUGGCAGCC (((......)))........(((((..(((((..(((...(((((((((((((..-..))).))----------------)))).))))...)))..)))))))))).... ( -36.10) >DroAna_CAF1 153411 80 + 1 GCGGCAGAAUGCAAACACAG-GCAUGGACAUGGACAUGAAUAAGG-----------ACAUGGCGGACGAUGG--------GGGGACAUGGAUGU-----------GCAGCC ..(((...((((........-))))...((((..(........).-----------.))))(((.((.(((.--------.....))).).).)-----------)).))) ( -18.90) >consensus GCAGCCGAAUGCAAACACAG_CCAUGGCCAUGGGCAUGAAUACGGCAGUGGAUCG_GCAUCGUGGUCCAUGGCCAUGGAAGUGGACAUGGAUGG____CUGGAUGGCAGCC ((.((((..............(((((.((((...((((...................................))))...)))).))))).............)))).)). (-11.05 = -13.21 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:02 2006