Locus 9925

Sequence ID 3R_DroMel_CAF1
Location 26,556,360 – 26,556,476
Length 116
Max. P 0.544024
window15824

overview

Window 4

Location 26,556,360 – 26,556,476
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 69.80
Mean single sequence MFE -37.35
Consensus MFE -12.78
Energy contribution -13.66
Covariance contribution 0.88
Combinations/Pair 1.36
Mean z-score -1.73
Structure conservation index 0.34
SVM decision value 0.02
SVM RNA-class probability 0.544024
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26556360 116 - 27905053
CAACCAGAUCACGAAAGGCAACGAAACCGUUCUCACUGAAUUCGCCUGGAUGGUGCUGUUAGAGUACCGU----CCUCAUGAUGGACAACAAUUGAGAACAUACUGCGCGGGAUCACUGA
......((((.((...(....)......(((((((......(((...((((((((((.....))))))))----))...)))((.....))..)))))))........)).))))..... ( -33.70)
>DroSec_CAF1 140365 116 - 1
AUACCACAUCACUAGGGGCAAUGAAACCGUUGUCACGGAAUUUGCCUGGAUGGUGCUGUUAGAGUACCGU----CGUCAUGGUGAACAACAAUUGGGAACGCAAUGCGCGGGAUCACUGA
...((...((((((.((((((.....((((....))))...)))))).(((((((((.....))))))))----)....))))))..............(((.....)))))........ ( -36.50)
>DroSim_CAF1 142176 116 - 1
AUACCAAAUCACUAGAGGCAAGGAAACCGUUGUCACGGAAUUUGCCUGGAUGGUGCUGUUAGAGUACCGU----CGUCAUGGUGAACAAGAAUUGGGAACGCACUGCGCGGGAUCACUGA
...((...((((((.(((((((....((((....))))..))))))).(((((((((.....))))))))----)....))))))..............(((.....)))))........ ( -37.80)
>DroEre_CAF1 153892 112 - 1
----CAGUUGGUUCCGGGCAAUAAAACUAUCCUCUCGGGUUUCCCCUGGUUGGUGGUAUUAGAGUACCGUAAAUCAAGCGAAGAGAUA----AAGAAAAAUGGGUGCAUGGGAUCACUGA
----((((.(((((((.(((............(((((((....)))(((((..((((((....))))))..)))))......))))..----............))).))))))))))). ( -33.27)
>DroYak_CAF1 148275 116 - 1
CGCGCAGAUCAUAGGUGGCAAGGAAGCUGUCCUCACGGAAUUCGCUUGGAUGGCGCUACUAGAGUACC----AACCAGCGAAUGGAUUGCAAUUGCAAACGGUCUGCGCGGGAUCACUGA
((((((((((..(((((((......)))).)))......(((((((.((.(((..((.....))..))----).)))))))))...((((....))))..)))))))))).......... ( -45.50)
>consensus
AUACCAGAUCACUAGAGGCAAGGAAACCGUUCUCACGGAAUUCGCCUGGAUGGUGCUGUUAGAGUACCGU____CCUCAUGAUGGACAACAAUUGAGAACGCACUGCGCGGGAUCACUGA
........((((((.((((.......(((......))).....))))....((((((.....))))))...........)))))).......................(((.....))). (-12.78 = -13.66 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:01 2006