| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,545,484 – 26,545,578 |
| Length | 94 |
| Max. P | 0.629647 |
| Location | 26,545,484 – 26,545,578 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 84.56 |
| Mean single sequence MFE | -19.80 |
| Consensus MFE | -14.76 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629647 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26545484 94 + 27905053 A-AAGCA-UCAUUUUCAUACACAAUCAAUCCUUGUAAUUGGCCGUUC--------------------UCGCGCUUUUUUCUAGUUUUUCCCAUGAAAAACGUAGCGCUAAAUGAAA .-.....-(((((((((...((((.......))))...)))......--------------------..(((((........(((((((....)))))))..))))).)))))).. ( -15.70) >DroVir_CAF1 167934 99 + 1 --------ACAUUUUCAUACACAAUCAAUCCUUGUAAUUGGCCGUUACGCGCUUUCCUG--------CU-AGCAUUUUUCUAGUUUUUCCCAUGAAAAACGUAGCGCUAAAUGAAA --------....((((((..((((.......))))..(((((.(((((..(((......--------..-))).........(((((((....))))))))))))))))))))))) ( -21.70) >DroPse_CAF1 173492 106 + 1 C-AAACA-UCAUUUUCAUACACAAUCAAUCCUUGUAAUUGGCCGUUACGCGUUUUCCUC--------UUCAGAUUUUUUCUAGUUUUUCCCAUGAAAAACGUAGCGCUAAAUGAAA .-.....-....((((((..((((.......))))..(((((.(((((...........--------...(((.....))).(((((((....))))))))))))))))))))))) ( -19.50) >DroGri_CAF1 287539 106 + 1 A-AAAUAUAUAUUUUCAUACACAAUCAAUCCUUGUAAUUGGCCGUUACGCGUUUUCCUG--------CU-AGCAUUUUUCUAGUUUUUCCCAUGAAAAACGUAGCGCCAAAUGAAA .-..........((((((..((((.......))))..(((((.((((((((......))--------).-............(((((((....))))))))))))))))))))))) ( -22.50) >DroAna_CAF1 136121 115 + 1 AGGAACA-UCAUUUUCAUACACAAUCAAUCCUUGUAAUUGGCCGUUACGCGCUUUCCACUGCCUUCUACUCGCUUUUUUCUAGUUUUUCCCAUGAAAAACGUAGCGCUAAAUGAAA .......-....((((((..((((.......))))..(((((.(((((..((........))....................(((((((....))))))))))))))))))))))) ( -19.90) >DroPer_CAF1 171356 106 + 1 C-AAACA-UCAUUUUCAUACACAAUCAAUCCUUGUAAUUGGCCGUUACGCGUUUUCCUC--------UUCAGAUUUUUUCUAGUUUUUCCCAUGAAAAACGUAGCGCUAAAUGAAA .-.....-....((((((..((((.......))))..(((((.(((((...........--------...(((.....))).(((((((....))))))))))))))))))))))) ( -19.50) >consensus A_AAACA_UCAUUUUCAUACACAAUCAAUCCUUGUAAUUGGCCGUUACGCGUUUUCCUC________UU_AGCUUUUUUCUAGUUUUUCCCAUGAAAAACGUAGCGCUAAAUGAAA ............((((((..((((.......))))..(((((.(((((.......................(.......)..(((((((....))))))))))))))))))))))) (-14.76 = -14.95 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:57 2006