Locus 9919

Sequence ID 3R_DroMel_CAF1
Location 26,523,065 – 26,523,156
Length 91
Max. P 0.865704
window15814

overview

Window 4

Location 26,523,065 – 26,523,156
Length 91
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 85.97
Mean single sequence MFE -24.43
Consensus MFE -16.54
Energy contribution -17.42
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -2.48
Structure conservation index 0.68
SVM decision value 0.85
SVM RNA-class probability 0.865704
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26523065 91 - 27905053
CUAAUUGAAAGGAUCGUUCCUUGACUUUAGGCAUUCCUG------GAACUUCAGAUUCAUGAAGUUCACUUUACCUGAAGCUAAACUGCUAAAUUGC
........(((((....)))))..(((((((........------((((((((......))))))))......)))))))................. ( -22.24)
>DroSec_CAF1 107385 87 - 1
CUAAUUGAAAGGAU----CCUUGACUUUAGGCAUUCCUG------GAACUUCAGAUUCAUGAAGUUCACUUUACCUGAAGUUAAACAGCUAAAUUGC
..........((..----..(((((((((((........------((((((((......))))))))......)))))))))))....))....... ( -22.74)
>DroSim_CAF1 109058 91 - 1
CUAAUUGAAAGGAUCGGUCCUUGACUUUAGGCAUUCCUG------GAACUUCACAUUCAUGAAGUUCACUUUACCUGAAGUUAAACAGCUAAAUUGC
........(((((....)))))(((((((((........------((((((((......))))))))......))))))))).....((......)) ( -23.94)
>DroEre_CAF1 115487 95 - 1
CUAAUUGAAAGGAGCUGUCCUUGACUCUGGUCAUUGCUGGAACUGGAACUUCAGAUUCGU--AGUUCACUUAACGUGCGGUUAAACUGCAUAAUUGC
........((((((((((((.((((....)))).....))).((((....)))).....)--))))).)))...((((((.....))))))...... ( -22.30)
>DroYak_CAF1 113952 91 - 1
CUAAUUGAAAGGAGCGGCCCUUGACUUUAGGCAUUCCUG------GAACUUCAGAUUCAUGAAGUUCACUUUACCUGAAGUUAAGCUGCAAAUUUGC
.............(((((..(((((((((((........------((((((((......))))))))......))))))))))))))))........ ( -30.94)
>consensus
CUAAUUGAAAGGAUCGGUCCUUGACUUUAGGCAUUCCUG______GAACUUCAGAUUCAUGAAGUUCACUUUACCUGAAGUUAAACUGCUAAAUUGC
........((((......))))(((((((((((....))......((((((((......))))))))......)))))))))............... (-16.54 = -17.42 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:52 2006