Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 26,501,827 – 26,501,917 |
Length | 90 |
Max. P | 0.678653 |
Location | 26,501,827 – 26,501,917 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 85.37 |
Mean single sequence MFE | -30.42 |
Consensus MFE | -21.76 |
Energy contribution | -21.18 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.25 |
Mean z-score | -2.91 |
Structure conservation index | 0.72 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26501827 90 - 27905053 ---CCGAACCAAAAUCCGGAGUUCUGGGCCAAAGAGACGGAGGCGGAGACGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA ---....(((....((((...((((.......)))).))))..((....))((((((((((.........))))))))))..)))........ ( -31.90) >DroPse_CAF1 133844 90 - 1 AGAUGGAGACAGAGAAUGGACUCGGAGGC---AGAGGCGGAGUCGGAGACGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA ..((((.(((((((......)))...(((---(...((((.((((....))))..)))).)))).....))).)..))))............. ( -31.10) >DroSec_CAF1 93691 90 - 1 ---CCGAACCAAAAUCCGGAGUCCUGGACCAAAGAGACGGAGGCGGAGGCGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA ---....(((....((((..(((((.......)).))).....))))....((((((((((.........))))))))))..)))........ ( -28.50) >DroSim_CAF1 95339 90 - 1 ---CCGAACCAAAAUCCGGAGUCCUGGGCCAAAGAGACGGAGGCGGAGGCGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA ---....(((....((((..(((((.......)).))).....))))....((((((((((.........))))))))))..)))........ ( -28.50) >DroYak_CAF1 99827 90 - 1 ---AUGAACCAAAGUCCGGAGUCCUGGACCAAAGAGACGGAGGCGGAGACGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA ---....(((...((((((....))))))..............((....))((((((((((.........))))))))))..)))........ ( -32.10) >DroPer_CAF1 131306 90 - 1 AGAUGGAGACAGAGAAUGGACUCGGAGGC---GGAGGCGGAGUCGGAGACGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA ..((((.(((((((......)))...(((---(...((((.((((....))))..)))).)))).....))).)..))))............. ( -30.40) >consensus ___CCGAACCAAAAUCCGGAGUCCUGGGCCAAAGAGACGGAGGCGGAGACGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA .......(((.....((...(((............)))...))((....))((((((((((.........))))))))))..)))........ (-21.76 = -21.18 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:51 2006