| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,495,695 – 26,495,796 |
| Length | 101 |
| Max. P | 0.908050 |
| Location | 26,495,695 – 26,495,796 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.55 |
| Mean single sequence MFE | -25.64 |
| Consensus MFE | -14.38 |
| Energy contribution | -13.63 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26495695 101 + 27905053 ----AGUCAGACGC------AGACACACCUCAUUGAUUUUAUUGUGCUUUUUUCGCAUU-------GAGGCAUUGAAAACGCUCAUAAAAAUGCCCACACAAUGAAAAC--GAUGAUGCG ----.......(((------(........((((((.(((((((((((.......))..(-------(.((((((...............)))))))).))))))))).)--))))))))) ( -23.86) >DroPse_CAF1 127076 108 + 1 ----CGUCAGACAC------AGACACACCUCAUUGAUUUUAUUGUGCUUUUUUCGCCUGCCCUGCCCCGGCAUUGAAAAUGCUCAUAAAAAUGCCCACACAAUGGAAAC--GAUGAUGCG ----.(((......------.))).....((((((.((((((((((...((((((..((((.......)))).)))))).((..........))...)))))))))).)--))))).... ( -24.60) >DroGri_CAF1 213311 102 + 1 ----ACACAUACACUGUGGCACACACACCUCAUUGAUUUUAUUGUGUUUUUUGCU------------GGGCAUUCAAAGUGCUCAUAAAAAUGCCCACACAAUAAAAAC--GAUGAUGCG ----.((((.....))))(((........((((((.(((((((((((((((((.(------------((((((.....))))))))))))).....))))))))))).)--)))))))). ( -31.00) >DroWil_CAF1 98597 106 + 1 ----CGUCAGAUAC------AGACACACCUCAUUGAUUUUAUUGUGUUUUUU--GCCUUC--UCACACAGCAUAGAAAAUGCUCAUAAAAAUGCCCACACAAUAAAAAUGUGAUGAUGUG ----.(((......------.))).(((.((((((.(((((((((((.....--((....--......(((((.....))))).........))..)))))))))))...)))))).))) ( -22.31) >DroMoj_CAF1 119535 100 + 1 NNNGACACACACAC------AGGCACACCUCAUUGAUUUUAUUGUGUUUUUUGCA------------GAGCAUUCAAAGUGCUCAUAAAAAUGCCCACACAAUAAAAAC--GAUGAUGCG ..............------..(((....((((((.(((((((((((((((((..------------((((((.....)))))).)))))).....))))))))))).)--)))))))). ( -27.50) >DroPer_CAF1 124441 108 + 1 ----CGUCAGACAC------AGACACACCUCAUUGAUUUUAUUGUGCUUUUUUCGCCUGCCCUGCCCCGGCAUUGAAAAUGCUCAUAAAAAUGCCCACACAAUGGAAAC--GAUGAUGCG ----.(((......------.))).....((((((.((((((((((...((((((..((((.......)))).)))))).((..........))...)))))))))).)--))))).... ( -24.60) >consensus ____AGUCAGACAC______AGACACACCUCAUUGAUUUUAUUGUGCUUUUUUCGCCU_________CGGCAUUGAAAAUGCUCAUAAAAAUGCCCACACAAUAAAAAC__GAUGAUGCG .............................(((((..((((((((((......................(((((.....)))))(((....)))....))))))))))....))))).... (-14.38 = -13.63 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:50 2006