Locus 9913

Sequence ID 3R_DroMel_CAF1
Location 26,479,127 – 26,479,228
Length 101
Max. P 0.618809
window15806

overview

Window 6

Location 26,479,127 – 26,479,228
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.74
Mean single sequence MFE -28.57
Consensus MFE -19.17
Energy contribution -19.37
Covariance contribution 0.19
Combinations/Pair 1.05
Mean z-score -1.27
Structure conservation index 0.67
SVM decision value 0.17
SVM RNA-class probability 0.618809
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26479127 101 - 27905053
UUCGGGUGACCAACGUGGCAUAGAAAUUAUGCGCAUUAUACGCG-----UCGCGCUCCAGCGCCUCGCUAAAAAAUUAUAUCCGCGGA-AUUAUG---CAA-------GCCACGG-UG--
...((....))..((((((......................(((-----..((((....))))..)))...............(((..-....))---)..-------)))))).-..-- ( -32.60)
>DroVir_CAF1 97090 87 - 1
UUCGGGUGACCAACGUGGCAUAGAAAUUAUGCGCAUUAUACGCG-----CCGCGCUUCAGCGCCUUGCUAAAAAAUUAUAUCCGCGGC-AUAA---------------------------
...((....))..(((((.(((..((((..((((.......)))-----).((((....))))..........)))).))))))))..-....--------------------------- ( -25.80)
>DroGri_CAF1 184878 100 - 1
UUUGGGUGACCAACGUGGCAUAGAAAUUAUGCGCAUUAUACGCG-----UCGCGCUUCAGCGCCUUGCUAAAAAAUUAUAUCCGUGGC-AUGC------AA-------AAAAGGA-GAAA
((((.(((.(((.((((((((((...)))))).))......(((-----..((((....))))..)))..............))))))-)).)------))-------)......-.... ( -25.50)
>DroWil_CAF1 79975 106 - 1
UUCGGGUGACCAACGUGGCAUAGAAAUUAUGCGCAUUAUACGGG-----UUGCGCUUCAGCGCCUCGCUAAAAAAUUAUAUCCGCGGACAUUAUAAUAUCA-------GCCAAAGGGA--
...((....))..(((((.(((..((((..(((((.........-----.)))))...((((...))))....)))).))))))))...............-------.((....)).-- ( -24.00)
>DroMoj_CAF1 98742 87 - 1
UGCGGGCGACCGACGUGGCAUAGAAAUUAUGCGCAUUAUACGCG-----CCGCGCUUCAGCGCCUUGCUAAAAAAUUAUAUCCGCGGC-AUAA---------------------------
(((((....))..(((((.(((..((((..((((.......)))-----).((((....))))..........)))).))))))))))-)...--------------------------- ( -27.00)
>DroPer_CAF1 105201 112 - 1
UUCG-GUGACCAACGUGGCAUAGAAAUUAUGCGCAUUAUACGCGGCACGGCGCGCUCCAGCGCCUCGCUAAAAAAUUAUAUCCGCGGA-AUUAUG---CGAACCCCAAGCCAGGG-GA--
(((.-(((.((.....))))).)))......(((((....(((((...(((((......)))))....(((....)))...)))))..-...)))---))..((((......)))-).-- ( -36.50)
>consensus
UUCGGGUGACCAACGUGGCAUAGAAAUUAUGCGCAUUAUACGCG_____UCGCGCUUCAGCGCCUCGCUAAAAAAUUAUAUCCGCGGA_AUUA_______A_______GCCA_GG_GA__
...((....))..(((((.(((..((((..(((.......)))........((((....))))..........)))).)))))))).................................. (-19.17 = -19.37 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:45 2006