Locus 9910

Sequence ID 3R_DroMel_CAF1
Location 26,471,880 – 26,471,972
Length 92
Max. P 0.727547
window15803

overview

Window 3

Location 26,471,880 – 26,471,972
Length 92
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 75.84
Mean single sequence MFE -18.32
Consensus MFE -5.11
Energy contribution -4.63
Covariance contribution -0.48
Combinations/Pair 1.40
Mean z-score -1.83
Structure conservation index 0.28
SVM decision value 0.42
SVM RNA-class probability 0.727547
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26471880 92 - 27905053
AUCAAAAUCAAGAAAUGGAAAUUCCUGCUAAAUAUCGUUUAAUGGUCGUGAACC-----AACCAUUAAUUGACAUUUUGCAUUAAAAGCACAAGAUA
......(((.......((.....))(((.((((.(((.((((((((.(....).-----.)))))))).))).)))).)))............))). ( -16.80)
>DroSec_CAF1 63898 96 - 1
AUCAAAAUCAAUAAAUGGAAAUUCCUCCCAAAUCUCGUUUGAUGGUCGUAA-CGAUGAUGGCCAUUAAUUGACAGUUGGCAUUAAAAUCACAAGAUA
......(((.......((.....))..((((...(((.(((((((((((..-.....))))))))))).)))...))))..............))). ( -20.30)
>DroSim_CAF1 64315 96 - 1
AUCAAAAUCAAUAAAUGGAAAUUCCUCCCAAAUCUCGUUUGAUGGUCGUAA-CGAUGAUGGCCAUUAAUUGACAGUUGGCAUUGAAAUCACAAGAUA
.......(((((....((.....))..((((...(((.(((((((((((..-.....))))))))))).)))...)))).)))))............ ( -22.00)
>DroEre_CAF1 72049 81 - 1
AUCAAAAUCGAGAAUUGGAA-----------AUAUCGUUUGAUAGUGGUGAACC-----AGCCAUUAUUUGACAGCUUGCAUUAUAAGCUCAAGAUA
....................-----------.(((((((.(((((((((.....-----.))))))))).)))((((((.....))))))...)))) ( -18.60)
>DroYak_CAF1 68268 83 - 1
AUCAAAAUCAAGAAUUGGAAAACCCUGCCAAAUAUCGUUUGAUG--------UC-----AGCCAAU-UUUGGCAGUUUGCAUUAUAAGCACAAGAUA
......(((...............((((((((....(((.(...--------.)-----)))....-))))))))..(((.......)))...))). ( -13.90)
>consensus
AUCAAAAUCAAGAAAUGGAAAUUCCUCCCAAAUAUCGUUUGAUGGUCGUAA_CC_____AGCCAUUAAUUGACAGUUUGCAUUAAAAGCACAAGAUA
.......(((((.(((((...........................................))))).)))))......................... ( -5.11 =  -4.63 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:42 2006