Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,169,788 – 3,169,948 |
Length | 160 |
Max. P | 0.898664 |
Location | 3,169,788 – 3,169,908 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -31.33 |
Consensus MFE | -29.55 |
Energy contribution | -29.67 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.16 |
Structure conservation index | 0.94 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.872039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3169788 120 + 27905053 CUAAACAUUUGAUGCAGGUCAUUUCGACACCGAAACGGUUGCCCCAUGACUCGGCAGCUUCCACUAACGAAUUAUGCGCUCUAGCGCCUCAUGUUCUCCGUCCAAAUCUUCUGUCAUCAU .........(((((((((..((((.(((........(((((((.........))))))).........((((...((((....)))).....))))...))).))))..)))).))))). ( -32.00) >DroSim_CAF1 928 120 + 1 CGAAACAUUUGAUGCAGGUCAUUUCGACACCGAAACGGUUGCCCCAUGACUCGGCAGCUUCCACUAACGAAUUAUGCGCUCUAGCGCCUCAUGUUCUCCGGCCAAAUCUUCUGUCAUCAU .........(((((((((((.....))).(((....(((((((.........))))))).........((((...((((....)))).....))))..))).........))).))))). ( -30.80) >DroYak_CAF1 1181 120 + 1 CGAAACAUUUGAUGCAGGUCAUUUCGACACCGAAACGGUUGCCCCAUGACUCGGCAGCUUCCACUAACGAAUUAUGCGCUCUAGCGCCUCAUGUUCUCCAGCCAAAUCUUCUGUCAUCAU .........(((((((((...(((((....))))).(((((...(((((.(((..((......))..))).....((((....)))).))))).....)))))......)))).))))). ( -31.20) >consensus CGAAACAUUUGAUGCAGGUCAUUUCGACACCGAAACGGUUGCCCCAUGACUCGGCAGCUUCCACUAACGAAUUAUGCGCUCUAGCGCCUCAUGUUCUCCGGCCAAAUCUUCUGUCAUCAU .........(((((((((...(((((....))))).(((((...(((((.(((..((......))..))).....((((....)))).))))).....)))))......)))).))))). (-29.55 = -29.67 + 0.11)
Location | 3,169,788 – 3,169,908 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -39.53 |
Consensus MFE | -37.32 |
Energy contribution | -37.43 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.92 |
Structure conservation index | 0.94 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3169788 120 - 27905053 AUGAUGACAGAAGAUUUGGACGGAGAACAUGAGGCGCUAGAGCGCAUAAUUCGUUAGUGGAAGCUGCCGAGUCAUGGGGCAACCGUUUCGGUGUCGAAAUGACCUGCAUCAAAUGUUUAG .(((((.(((...((((.((((..((((((((.((((....))))....((((.((((....)))).)))))))))((....))..)))..)))).))))...))))))))......... ( -40.10) >DroSim_CAF1 928 120 - 1 AUGAUGACAGAAGAUUUGGCCGGAGAACAUGAGGCGCUAGAGCGCAUAAUUCGUUAGUGGAAGCUGCCGAGUCAUGGGGCAACCGUUUCGGUGUCGAAAUGACCUGCAUCAAAUGUUUCG .(((((.(((........(((((((..(((((.((((....))))....((((.((((....)))).)))))))))((....)).)))))))(((.....)))))))))))......... ( -40.10) >DroYak_CAF1 1181 120 - 1 AUGAUGACAGAAGAUUUGGCUGGAGAACAUGAGGCGCUAGAGCGCAUAAUUCGUUAGUGGAAGCUGCCGAGUCAUGGGGCAACCGUUUCGGUGUCGAAAUGACCUGCAUCAAAUGUUUCG .........((((((((((.((.((..(((..(((((..((((.(((.(((((.((((....)))).))))).)))((....))))))..)))))...)))..)).)))))))).)))). ( -38.40) >consensus AUGAUGACAGAAGAUUUGGCCGGAGAACAUGAGGCGCUAGAGCGCAUAAUUCGUUAGUGGAAGCUGCCGAGUCAUGGGGCAACCGUUUCGGUGUCGAAAUGACCUGCAUCAAAUGUUUCG .(((((.(((........(((((((..(((((.((((....))))....((((.((((....)))).)))))))))((....)).)))))))(((.....)))))))))))......... (-37.32 = -37.43 + 0.11)
Location | 3,169,828 – 3,169,948 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -36.93 |
Consensus MFE | -36.50 |
Energy contribution | -36.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.99 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3169828 120 - 27905053 GGCAAUUGCUAUUGAUUAAAUCGGCUUAAAGCUUUGACUAAUGAUGACAGAAGAUUUGGACGGAGAACAUGAGGCGCUAGAGCGCAUAAUUCGUUAGUGGAAGCUGCCGAGUCAUGGGGC .......(((..((((....(((((....((((((.((((((((...((((...))))...............((((....)))).....)))))))).)))))))))))))))...))) ( -36.50) >DroSim_CAF1 968 120 - 1 GGCAAUUGCUAUUGAUUAAAUCGGCUUAAAGCUUUGACUAAUGAUGACAGAAGAUUUGGCCGGAGAACAUGAGGCGCUAGAGCGCAUAAUUCGUUAGUGGAAGCUGCCGAGUCAUGGGGC .......(((..((((....(((((....((((((.((((((((...((((...))))...............((((....)))).....)))))))).)))))))))))))))...))) ( -36.50) >DroYak_CAF1 1221 120 - 1 GGCAAUUGCUAUUGAUUAAAUCGGCUUAAAGCUUUGACUAAUGAUGACAGAAGAUUUGGCUGGAGAACAUGAGGCGCUAGAGCGCAUAAUUCGUUAGUGGAAGCUGCCGAGUCAUGGGGC .......(((..((((....(((((....((((((.((((((((...(((.........)))...........((((....)))).....)))))))).)))))))))))))))...))) ( -37.80) >consensus GGCAAUUGCUAUUGAUUAAAUCGGCUUAAAGCUUUGACUAAUGAUGACAGAAGAUUUGGCCGGAGAACAUGAGGCGCUAGAGCGCAUAAUUCGUUAGUGGAAGCUGCCGAGUCAUGGGGC .......(((..((((....(((((....((((((.((((((((...((((...))))...............((((....)))).....)))))))).)))))))))))))))...))) (-36.50 = -36.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:49 2006