Locus 9909

Sequence ID 3R_DroMel_CAF1
Location 26,471,435 – 26,471,527
Length 92
Max. P 0.900460
window15802

overview

Window 2

Location 26,471,435 – 26,471,527
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 78.34
Mean single sequence MFE -34.30
Consensus MFE -15.04
Energy contribution -16.85
Covariance contribution 1.81
Combinations/Pair 1.27
Mean z-score -2.68
Structure conservation index 0.44
SVM decision value 1.01
SVM RNA-class probability 0.900460
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26471435 92 + 27905053
CUCGAGAAGUGGCACCAUUGUCACCAGUGAUAAGGAGUGACUCUUUUCAAGCGGACGGUGUCCGAGGACCAAGGUGCU-GUGAAACAGCAUCA
(((((((((.(.((((.((((((....)))))).).))).).))))))....((((...)))))))......((((((-(.....))))))). ( -33.80)
>DroSec_CAF1 63472 92 + 1
UUCCAGGAGUGGCACCAGUGUCACCAGUGACAAGGAGUGACUCCUUUCAAGCGGACGGUCUCCCAGGACCAGGGUGCU-GUGAAACAGCAUCA
.(((((((((.((.((..(((((....))))).)).)).)))))).......))).(((((....)))))..((((((-(.....))))))). ( -38.21)
>DroSim_CAF1 63859 92 + 1
UUCCAGGAGUGGCACCAUUGUCACCAGUGACAAGGAGUGACUCCUUUCAAGCGGACGGUGUCCCAGGACCAGGGUGCU-GUGAAACAGCAUCA
.(((((((((.((.((.((((((....)))))))).)).)))))).....(.((((...))))).)))....((((((-(.....))))))). ( -39.10)
>DroEre_CAF1 71275 92 + 1
UUCCAGAAGUGGCACCAUUGUCACCACUGACAAGGAGUGACUCCUUUCAAGCGGACGGUGCCCGAGCACCAAGGUGCU-GAGCAACAGCAUCA
.(((....((((((....))))))...(((.((((((...)))))))))...))).(((((....)))))..((((((-(.....))))))). ( -34.80)
>DroYak_CAF1 65885 92 + 1
CUCCAGAAGUGGCACCAUUGUCACCAGCGACAAGGAGUGACUCUUCUCAAGAGGAUGUUGUCCAAGGACCAACGUGCU-GUGAAACAGCAACA
(((.(((((.(.((((.(((((......))))).).))).).)))))...))).((((((((....)).))))))(((-(.....)))).... ( -28.50)
>DroPer_CAF1 96722 89 + 1
CUCCACGAGUGGCUUCAUCGACACCACUGAGAGGGAGU-ACUCCGCUCCGGUAAGAGAUCCUGCUGCAACAAGCGGCAGGAGCAAUA---AAG
(((...(.(((..........))))((((.((((((..-..))).)))))))..))).(((((((((.....)))))))))......---... ( -31.40)
>consensus
CUCCAGAAGUGGCACCAUUGUCACCAGUGACAAGGAGUGACUCCUUUCAAGCGGACGGUGUCCCAGGACCAAGGUGCU_GUGAAACAGCAUCA
..........((((((.((((((....))))))((((...))))............))))))..........((((((........)))))). (-15.04 = -16.85 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:41 2006