| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,462,897 – 26,462,995 |
| Length | 98 |
| Max. P | 0.575235 |
| Location | 26,462,897 – 26,462,995 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 84.17 |
| Mean single sequence MFE | -22.78 |
| Consensus MFE | -18.14 |
| Energy contribution | -17.78 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26462897 98 - 27905053 -----------------UUUGCUCCAGCUGCCUUCGUCCUUCGGAUGAAGUCGCCCCGCCUCCUGCUGCUUCUUGUGGCACUUUUAAUUUUACUCACAGUUUAUUCAAUCUACG-A -----------------.(((....(((((.((((((((...)))))))).............(((..(.....)..)))................)))))....)))......-. ( -19.40) >DroSec_CAF1 55098 98 - 1 -----------------UUUGCUCCAGCUGCCUUCGUCCUUCGGAUGAAGUUGCCCCGCCUCCUGUCGCUUCUUGUGGCACUUUUAAUUUUACUCACAGUUUAUUCAAUCUUCG-A -----------------.(((....(((((.((((((((...)))))))).............((((((.....))))))................)))))....)))......-. ( -19.50) >DroSim_CAF1 55313 98 - 1 -----------------UUUGCUCCAGCUGGCUUCGUCCUUCGGAUGAAGUUGCCCCGCCUCCUGCCGCUUCUUGUGGCACUUUUAAUUUUACUCACAGUUUAUUCAAUCUUCG-A -----------------.(((....((((((((((((((...)))))))))............((((((.....))))))................)))))....)))......-. ( -24.70) >DroEre_CAF1 62737 98 - 1 -----------------UUUGCUCCGGCUGCCUUCGUCCUUCGGAUGAAGUCGCCCCGCCUCGUGCAGCUUCUUGUGGCACUUUUAAUUUUACUCACAGUUUAUUCAAUCUUCG-A -----------------...((...(((.(.((((((((...)))))))).))))..))...((((.((.....)).)))).................................-. ( -22.00) >DroYak_CAF1 57257 98 - 1 -----------------UUUGCUCCAGCUGACUUCGUCCUUCGGAUGAAGUUACCCCGCCUGCUGCAGCUUCUUGUGGCACUUUUAAUUUUACUCACAGUUUAUUCAAUCUACG-A -----------------...(((.(((((((((((((((...)))))))))))........)))).)))...((((((...............))))))...............-. ( -22.66) >DroAna_CAF1 56335 115 - 1 CUCCGUGGAGUGGGUGUUGUGCUCCAGCUGCUUUGGUCCUUGGCGCCAAAGUACCA-ACCAUUCCCCGCUACUUGUGGCACUUUUAAUUUUACUCACAGUUUAUUCAAUCUUCGUA ....(.(((((((..((((.....))))((((((((((....).)))))))))...-.))))))).)((((....))))..................................... ( -28.40) >consensus _________________UUUGCUCCAGCUGCCUUCGUCCUUCGGAUGAAGUUGCCCCGCCUCCUGCCGCUUCUUGUGGCACUUUUAAUUUUACUCACAGUUUAUUCAAUCUUCG_A .........................(((((.((((((((...)))))))).............((((((.....))))))................)))))............... (-18.14 = -17.78 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:37 2006