Locus 9905

Sequence ID 3R_DroMel_CAF1
Location 26,460,046 – 26,460,137
Length 91
Max. P 0.508583
window15796

overview

Window 6

Location 26,460,046 – 26,460,137
Length 91
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 72.14
Mean single sequence MFE -12.76
Consensus MFE -3.94
Energy contribution -4.78
Covariance contribution 0.84
Combinations/Pair 1.25
Mean z-score -1.66
Structure conservation index 0.31
SVM decision value -0.05
SVM RNA-class probability 0.508583
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26460046 91 + 27905053
UAAUUUAUAAAGGGGAAUAGUUUGAUAUUCCUUGUUCACCACAUUAAACACCCUUUCUUUUCAUGUA-UUAACCUUUAUACAGCCACCUU-------UC
.....((((((((((((((......)))))).........((((.(((..........))).)))).-....))))))))..........-------.. ( -13.90)
>DroSec_CAF1 52263 90 + 1
UAAUUUAUAAAGGGG-AUAGUUGGAUAUUCCUUGUUAACCACAAUAUACACCCUUAUUUUUCAUGUA-UUAACCUUUAUACAGCCACCUU-------UC
.........(((((.-(((..(((.((........)).)))...)))...)))))........((((-(........)))))........-------.. ( -12.30)
>DroSim_CAF1 52496 91 + 1
UAAUUUAUAAAGGGGAAUAGUUGGUUAUUCCUUGUUCACCACAUUAUACACCCUUUCUUUCAAUGUA-UUAACCUUUAUACAGCCACCUU-------UC
........(((((((.(((((((((.(........).)))).))))).).)))))).......((((-(........)))))........-------.. ( -14.10)
>DroEre_CAF1 59869 88 + 1
UUAUUCAUAAAGCGGAAUGGUUGGAUACUCCUCG---AUCACCUUAUGCACUCCUUUUUG-AAUACCCUUUCCCCUCAAAUAUGCCCAUU-------UC
.((((((.((((.((..(((((((.......)))---)))).(....)..)).)))).))-)))).........................-------.. (  -9.60)
>DroYak_CAF1 54334 98 + 1
UGAUUCAUAAAGGGAAAGUGUUGCAUAUUCCUCGUACAUCACCUUAUACACUCUUUAUUG-GAUACCCUUUCCUUUCGAAUAUUCCCAUUUCCCAUUUC
...........((((((.((..(.((((((...(((.(......).)))..........(-((.......)))....)))))))..))))))))..... ( -13.90)
>consensus
UAAUUUAUAAAGGGGAAUAGUUGGAUAUUCCUUGUUCACCACAUUAUACACCCUUUCUUU_AAUGUA_UUAACCUUUAUACAGCCACCUU_______UC
...........((((((((......)))))))).................................................................. ( -3.94 =  -4.78 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:36 2006