Locus 9903

Sequence ID 3R_DroMel_CAF1
Location 26,457,552 – 26,457,660
Length 108
Max. P 0.540393
window15793

overview

Window 3

Location 26,457,552 – 26,457,660
Length 108
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 92.44
Mean single sequence MFE -29.63
Consensus MFE -26.36
Energy contribution -26.28
Covariance contribution -0.08
Combinations/Pair 1.07
Mean z-score -1.15
Structure conservation index 0.89
SVM decision value 0.01
SVM RNA-class probability 0.540393
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26457552 108 - 27905053
-UUUGCCGGUGGAUUUACAUUUUGUGACAGCUGAUUUAUGGCCUUGGCUUGACGUGGGAUCCUGUGAAAGGAUUCUUAAAGGAUGCACAUGGAAUAAUUAGCUAAGAAU
-.(..(.((((......))))..)..).((((((((.....((.((((.......((((((((.....))))))))........)).)).))...))))))))...... ( -26.36)
>DroSec_CAF1 49748 108 - 1
-UUUGCCGGUGGAUUUACAUUUUGUGACAGCUGAUUUAUGGUCUUGGCCUGACGUGGGAUCCUGUGAAAGGAUUCUUAAAGGAAGCACAGGGAAUAAUUAGCUAAGAAU
-.(..(.((((......))))..)..).((((((((.....(((((..((..(..((((((((.....))))))))....)..))..)))))...))))))))...... ( -28.40)
>DroSim_CAF1 49959 108 - 1
-UUUUCCGGUGGAUUUACAUUUUGUGACAGCUGAUUUAUGGUCUUGGCCUGACGUGGGAUCCUGUGAAAGGAUUCUUAAAGGAAGCACAGGGAAUAAUUAGCUAAGAAU
-...(((...))).((((.....)))).((((((((.....(((((..((..(..((((((((.....))))))))....)..))..)))))...))))))))...... ( -27.50)
>DroEre_CAF1 57261 108 - 1
UUUUGCCGGUGGAUUUACAUUUUGUGACAGCUGAUUUAUGGUCUUGGCUUGACGCGGGAUCCUGUGAAAGGAUUCUUGCAGG-AGCGCAGGGAAUAAUUAGCUUAGAAA
..(..(.((((......))))..)..).((((((((.....(((((((((...((((((((((.....)))).))))))..)-))).)))))...))))))))...... ( -31.30)
>DroYak_CAF1 51737 108 - 1
-UUUGCCGGUGGAUUUACAUUUUGUGACAGCUGAUUUAUGGUCCUGGCUUGACGCGGGAUCCUGCGAAAGGAUUCUUGCUGGAAGCGCAGGGAAUAAUUAGCUUGGAAA
-....(((......((((.....)))).((((((((.....(((((((((...((((((((((.....)))).))))))...)))).)))))...)))))))))))... ( -34.60)
>consensus
_UUUGCCGGUGGAUUUACAUUUUGUGACAGCUGAUUUAUGGUCUUGGCUUGACGUGGGAUCCUGUGAAAGGAUUCUUAAAGGAAGCACAGGGAAUAAUUAGCUAAGAAU
..(..(.((((......))))..)..).((((((((.....(((((((.......((((((((.....))))))))........)).)))))...))))))))...... (-26.36 = -26.28 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:34 2006