Locus 9902

Sequence ID 3R_DroMel_CAF1
Location 26,457,260 – 26,457,350
Length 90
Max. P 0.987049
window15792

overview

Window 2

Location 26,457,260 – 26,457,350
Length 90
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 93.82
Mean single sequence MFE -19.47
Consensus MFE -17.54
Energy contribution -17.27
Covariance contribution -0.28
Combinations/Pair 1.09
Mean z-score -2.02
Structure conservation index 0.90
SVM decision value 2.06
SVM RNA-class probability 0.987049
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26457260 90 + 27905053
ACUU-UGGAUUGACAUUUCAGCGAAGGCUGAGCCAGUUAAUUCAAUUUCCGCAAGCUGAAACAAAAAUAAAAGAAGAGU-UCACAAAGUUUA
.(((-(((((((((..((((((....))))))...))))))))..(((((....)..))))...........))))...-............ ( -20.20)
>DroSec_CAF1 49459 90 + 1
ACUU-UGGAUUGACAUUUCAGCGAAGGCUGAGCCAGUUAAUUCAAUUUCCGCAAGCUGAAACAAAAAUAAAAGAAGAGU-UCACAAAGUUUA
.(((-(((((((((..((((((....))))))...))))))))..(((((....)..))))...........))))...-............ ( -20.20)
>DroSim_CAF1 49670 90 + 1
ACUU-UGGAUUGACAUUUCAGCGAAGGCUGAGCCAGUUAAUUCAAUUUCCGCAAGCUGAAACAAAAAUAAAAGAAGAGU-UCACAAAGUUUA
.(((-(((((((((..((((((....))))))...))))))))..(((((....)..))))...........))))...-............ ( -20.20)
>DroEre_CAF1 56963 90 + 1
ACUU-UGGAUUGACAUUUCAGCGAAUGCUGAGCCAGUUAAUUCAAUUUCCGCAAGCUGAAACAAAAAUAAAAGAAGAGU-UCACAAAGUUUA
.(((-(((((((((..((((((....))))))...))))))))..(((((....)..))))...........))))...-............ ( -17.20)
>DroYak_CAF1 51462 90 + 1
ACUU-UGGAUUGACAUCUCAGCGAAGGCUGAGCCAGUUAAUUCAAUUUCCGCAAGCUGAAACAAAAAUAAAAGAAGAGU-UCACAAAGUUUA
.(((-(((((((((..((((((....))))))...))))))))..(((((....)..))))...........))))...-............ ( -22.40)
>DroAna_CAF1 50372 91 + 1
ACUUCCGAAUUGACAUUUCAGCGGA-GCUGAGGACGUUAAUUCAAUUUCCACAAGCUGAAACAAAAAUAAAAGAAUCUUGGCUCAAAGUUUA
......((((((((.(((((((...-)))))))..)))))))).........(((((((..(((.............)))..))..))))). ( -16.62)
>consensus
ACUU_UGGAUUGACAUUUCAGCGAAGGCUGAGCCAGUUAAUUCAAUUUCCGCAAGCUGAAACAAAAAUAAAAGAAGAGU_UCACAAAGUUUA
((((..((((((((..((((((....))))))...))))))))..(((((....)..))))........................))))... (-17.54 = -17.27 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:33 2006