| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,453,144 – 26,453,248 |
| Length | 104 |
| Max. P | 0.516743 |
| Location | 26,453,144 – 26,453,248 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 82.48 |
| Mean single sequence MFE | -23.97 |
| Consensus MFE | -16.15 |
| Energy contribution | -16.51 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26453144 104 - 27905053 AGGAACGGAC--GGC-AAAACAUAAUACCCAAUAAUCCGCCACGAAUUUUCCAUUCGGUGGCCUCUUUAAUUGGAAUUGAAAAUUCUUGAUUGGAACAUUUUGAAUU ..........--...-............(((((((...(((((((((.....)))).)))))....)).)))))((((.((((((((.....)))..))))).)))) ( -15.90) >DroSec_CAF1 45460 104 - 1 AGGAACGGAC--GGG-AAAACAUAUUACCCAAUCCUCCGCCAGGAAUUUUCCAUUCAGUGGCCUCUUUAAUUUGAAUUGGAAAUUCUUGAUUGGAGCAUUUUGAAUU .....((((.--(((-...........)))....(((((.(((((((((((.((((((.............)))))).)))))))))))..)))))...)))).... ( -24.52) >DroSim_CAF1 45448 104 - 1 AGGAACGGAC--GGG-AAAACAUAUUACCCAAUCCUCCGCCAGGAAUUUUCAAUUCGGUGGCCUCUUUAAUUUGAAUUGGAAAUUCUUGAUUGGAGCAUUUUGAAUU .....((((.--(((-...........)))....(((((.((((((((((((((((((.............))))))))))))))))))..)))))...)))).... ( -27.82) >DroEre_CAF1 51125 103 - 1 UGGAACAGAC--GGG--AAACAUAUUACUCAAUCCUCCGCCAAGAAUUUUCAAUACGUUGCCCUCUUUAAAGGAAAUUGAAAAUUCUUGAUUGGAGCAUUUGAAAUU ..........--.(.--...).......((((..(((((.((((((((((((((.......(((......)))..))))))))))))))..)))))...)))).... ( -24.50) >DroYak_CAF1 47083 105 - 1 AGGAACAGAC--GGGGAAAACAUAUUACUCAAUCCUCCGCCAAGAAUUUUCAAUUCGUUGCCCUCUUUAAUGGAUAUUGAAAAUUCUUGAUUGGAGCAUUUGGAAUC .....((((.--(((............)))....(((((.((((((((((((((((((((.......))))))))..))))))))))))..)))))..))))..... ( -25.50) >DroAna_CAF1 46032 100 - 1 UAUAACAGACUUGGG-GAUACACGUUAU-CUAUAUUCCGGCAAGAAUUUUCAAUUU-UUGGCCUGUUUAA----AAUUGAAAAUUCUUGUUUGGGGCAUUUUUAACU ...............-.......((((.-..((.((((((((((((((((((((((-(..(....)..))----))))))))))))))).)))))).))...)))). ( -25.60) >consensus AGGAACAGAC__GGG_AAAACAUAUUACCCAAUCCUCCGCCAAGAAUUUUCAAUUCGGUGGCCUCUUUAAUUGGAAUUGAAAAUUCUUGAUUGGAGCAUUUUGAAUU ..................................(((((.(((((((((((((((...................)))))))))))))))..)))))........... (-16.15 = -16.51 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:31 2006