Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,169,042 – 3,169,162 |
Length | 120 |
Max. P | 0.571661 |
Location | 3,169,042 – 3,169,162 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -35.31 |
Consensus MFE | -32.64 |
Energy contribution | -32.97 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.92 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3169042 120 - 27905053 CCGGCUCAUCCUCCGAAUCCUCUCGGCUCUGGCCUGCUUUGUUUCAUGUUGUGGUGGCUUGCUUUUAGUUGCCUCUAUUAUCCUUAAUGCGAGUCACUUUGUUAGAAACGUCAGUGGGCC ............((((......))))....((((..((.((((((.((....((((((((((....((..............))....))))))))))....))))))))..))..)))) ( -35.04) >DroSec_CAF1 17155 120 - 1 CCGUCUCAUCCUCCGAAUCCUCUCGGCUGUGGCCUGCUUUGUUUCAUGUUGUGGUGGCUUGCUUUUAGUUGCCUCUAUUAUCCUUAAUGCGAGUCACUUUGUUAGAAACGUCAGUGGGCC ............((((......))))....((((..((.((((((.((....((((((((((....((..............))....))))))))))....))))))))..))..)))) ( -35.04) >DroEre_CAF1 8778 119 - 1 CAGGCUCAUCCUCCGAUUCCGCUCGGAUCUGG-CUGCUUUGUUUCAUGUUGUGGUGGCUUGCUUUUAGUUGCCUCUAUUAUCCUUAAUGCGAGUCACUUUGUUAGAAACGUCAGUGGGCC ..(((((....(((((......)))))....(-(((...((((((.((....((((((((((....((..............))....))))))))))....)))))))).))))))))) ( -35.84) >consensus CCGGCUCAUCCUCCGAAUCCUCUCGGCUCUGGCCUGCUUUGUUUCAUGUUGUGGUGGCUUGCUUUUAGUUGCCUCUAUUAUCCUUAAUGCGAGUCACUUUGUUAGAAACGUCAGUGGGCC ............((((......))))....((((..((.((((((.((....((((((((((....((..............))....))))))))))....))))))))..))..)))) (-32.64 = -32.97 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:46 2006