Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 607,612 – 607,704 |
Length | 92 |
Max. P | 0.866796 |
Location | 607,612 – 607,704 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 85.72 |
Mean single sequence MFE | -29.83 |
Consensus MFE | -24.58 |
Energy contribution | -25.22 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.23 |
Mean z-score | -2.42 |
Structure conservation index | 0.82 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 607612 92 + 27905053 GAACCUUCAGUUUUUCCAGCUCGCGGCAGUAGGCCGCCUCAAGUUCCUUCAGCUCCAGUUCGGCCCGCUCGCGAUCUAGAAAUUAGAAGUAU ....((((....((((.((.(((((..((..(((((.((..((((.....))))..))..)))))..))))))).)).))))...))))... ( -28.70) >DroSec_CAF1 23644 92 + 1 GAAUCUUCAGUUUUUCCAGCUCGCGGCAGUAGGCCGCCUCAAGUUCCUUCAGCUCCAGUUCGGCCCGCUCGCGAUCUGGAAUUUAAAGGUAU ..(((((.((...((((((.(((((..((..(((((.((..((((.....))))..))..)))))..))))))).)))))).)).))))).. ( -33.30) >DroSim_CAF1 22806 92 + 1 GAAUCUUCAGUUUUUCCAGCUCGCGGCAGUAGGCCGCCUCAAGUUCCUUCAGCUCCAGUUCGGCCCGCUCGCGAUCUGGAAUUUAAAGGUAU ..(((((.((...((((((.(((((..((..(((((.((..((((.....))))..))..)))))..))))))).)))))).)).))))).. ( -33.30) >DroEre_CAF1 26408 92 + 1 GAACCUUCAAUUUUUCCAGCUCGCGACAGUAGGCCGCCUCAAGCUCCUUUAGCUCCAACUCGGCCCGCUCGCGAUCUGAAAUUCAGAAGAAG ....((((....((((.((.((((((..(..(((((.....((((.....))))......)))))..))))))).))))))....))))... ( -30.20) >DroYak_CAF1 30454 92 + 1 GAACCUUUAGUUUUUCAAGCUCGCGGCAGUAGGCCGCCUCAAGCUCCUUCAGCUCCAACUCGGCCCGCUCGCGAUCUAGAAUUUAAAAGAAU ....((((.....(((.((.(((((..((..(((((.....((((.....))))......)))))..))))))).)).)))....))))... ( -26.90) >DroAna_CAF1 26734 92 + 1 ACACCUUCAGCUUCUCUAGGUCGCGGCAAUAGGAGGCCUCUAGCUCCUUCAGCUCAAUCUCAGCUCGCUCGCGAUCUGCAAAUAAGGGGAAU ...........((((((((((((((((...(((((........)))))..((((.......)))).)).))))))))........)))))). ( -26.60) >consensus GAACCUUCAGUUUUUCCAGCUCGCGGCAGUAGGCCGCCUCAAGCUCCUUCAGCUCCAGCUCGGCCCGCUCGCGAUCUGGAAUUUAAAAGAAU ....((((.....((((((.(((((..((..(((((.....((((.....))))......)))))..))))))).))))))....))))... (-24.58 = -25.22 + 0.64)
Location | 607,612 – 607,704 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 85.72 |
Mean single sequence MFE | -33.82 |
Consensus MFE | -25.42 |
Energy contribution | -26.12 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.21 |
Mean z-score | -2.43 |
Structure conservation index | 0.75 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.628817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 607612 92 - 27905053 AUACUUCUAAUUUCUAGAUCGCGAGCGGGCCGAACUGGAGCUGAAGGAACUUGAGGCGGCCUACUGCCGCGAGCUGGAAAAACUGAAGGUUC ...((((...(((((((.(((((.((((((((..((.(((.........))).)).))))))...))))))).)))))))....)))).... ( -36.00) >DroSec_CAF1 23644 92 - 1 AUACCUUUAAAUUCCAGAUCGCGAGCGGGCCGAACUGGAGCUGAAGGAACUUGAGGCGGCCUACUGCCGCGAGCUGGAAAAACUGAAGAUUC ....(((((..((((((.(((((.((((((((..((.(((.........))).)).))))))...))))))).))))))....))))).... ( -35.20) >DroSim_CAF1 22806 92 - 1 AUACCUUUAAAUUCCAGAUCGCGAGCGGGCCGAACUGGAGCUGAAGGAACUUGAGGCGGCCUACUGCCGCGAGCUGGAAAAACUGAAGAUUC ....(((((..((((((.(((((.((((((((..((.(((.........))).)).))))))...))))))).))))))....))))).... ( -35.20) >DroEre_CAF1 26408 92 - 1 CUUCUUCUGAAUUUCAGAUCGCGAGCGGGCCGAGUUGGAGCUAAAGGAGCUUGAGGCGGCCUACUGUCGCGAGCUGGAAAAAUUGAAGGUUC ..(((((....((((((.(((((((..(((((..((.(((((.....))))).)).)))))..)..)))))).)))))).....)))))... ( -38.10) >DroYak_CAF1 30454 92 - 1 AUUCUUUUAAAUUCUAGAUCGCGAGCGGGCCGAGUUGGAGCUGAAGGAGCUUGAGGCGGCCUACUGCCGCGAGCUUGAAAAACUAAAGGUUC ...((((((..(((.((.(((((.((((((((..((.(((((.....))))).)).))))))...))))))).)).)))....))))))... ( -33.00) >DroAna_CAF1 26734 92 - 1 AUUCCCCUUAUUUGCAGAUCGCGAGCGAGCUGAGAUUGAGCUGAAGGAGCUAGAGGCCUCCUAUUGCCGCGACCUAGAGAAGCUGAAGGUGU .....((((.(((..((.(((((.(((((((.......)))...((((((.....).))))).))))))))).))...)))....))))... ( -25.40) >consensus AUACCUCUAAAUUCCAGAUCGCGAGCGGGCCGAACUGGAGCUGAAGGAACUUGAGGCGGCCUACUGCCGCGAGCUGGAAAAACUGAAGGUUC ...........((((((.(((((.((((((((..((.(((.........))).)).))))))...))))))).))))))............. (-25.42 = -26.12 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:04 2006