| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,436,923 – 26,437,013 |
| Length | 90 |
| Max. P | 0.633277 |
| Location | 26,436,923 – 26,437,013 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 65.21 |
| Mean single sequence MFE | -22.52 |
| Consensus MFE | -10.53 |
| Energy contribution | -11.84 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26436923 90 - 27905053 GCACUCACCAGUACCCAAAUCAUCAUACCC--C----AAAGUACUGGGUACAACCACAGCACGGACAGGACCCCAGUCCAGCUGUCCGUCCAUGUC ..........(((((((.............--.----.......)))))))....(((..(((((((((((....))))...)))))))...))). ( -25.30) >DroSec_CAF1 29201 87 - 1 GCAAUCGCCAGUACGC--AUCAUCAUGCCC--C----AAAGUACUGGGUACAACCACAGCAUGGACAGGACC-CAGCGCAGCUGUCCGUCCGUGUC .......(((((((((--((....))))..--.----...)))))))...........((((((((.((((.-.(((...))))))))))))))). ( -29.60) >DroSim_CAF1 29239 87 - 1 GCAAUCGCCAGUACGC--AUCAUCAUGCCC--C----AAAGUACUGGGUACAACCACAGCAUGGACAGGACC-CAGCCCAGCUGUCCGUCCGUGUC .......(((((((((--((....))))..--.----...)))))))...........((((((((.((((.-.(((...))))))))))))))). ( -29.60) >DroEre_CAF1 34788 73 - 1 ------------------CUCAUCAUACCCGCU-----GCGUACAGGGUACAACCAGAGCACGGACAGGGUCCCACUACAGCUGUCUGUCCGUGUC ------------------.......(((((...-----.......)))))........(((((((((((((.........)))..)))))))))). ( -22.40) >DroYak_CAF1 30323 71 - 1 GAA---------------AUCAUCAUGCCCUCC----AAUGUACAGGGUACAACUAGAGC------AGCAUCCCAGGACAGCUGUCCGUCCGUGUC ...---------------.......((((((..----.......))))))......(..(------(((.((....))..))))..)......... ( -14.50) >DroAna_CAF1 29469 78 - 1 ------------------CUCAUCAUACCCUUGAUAAUAACCACGAGGUAAUACAAGGACACAGACAGGACUGCAGCUUCAUUGUCCGGCCGGGCC ------------------(((.......(((((.((...(((....)))..))))))).........((((............))))....))).. ( -13.70) >consensus GCA_______________AUCAUCAUACCC__C____AAAGUACUGGGUACAACCACAGCACGGACAGGACCCCAGCACAGCUGUCCGUCCGUGUC .........................(((((...............)))))........((((((((.((((............)))))))))))). (-10.53 = -11.84 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:28 2006