Locus 9897

Sequence ID 3R_DroMel_CAF1
Location 26,432,607 – 26,432,719
Length 112
Max. P 0.741544
window15786

overview

Window 6

Location 26,432,607 – 26,432,719
Length 112
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 81.96
Mean single sequence MFE -34.85
Consensus MFE -21.35
Energy contribution -22.75
Covariance contribution 1.40
Combinations/Pair 1.37
Mean z-score -2.35
Structure conservation index 0.61
SVM decision value 0.45
SVM RNA-class probability 0.741544
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26432607 112 - 27905053
AUCCCCAUCACCUCAUGGUAUUUACGUGGUUGAUCCACCAACAAAUCCUUGGCUGCACUCAGCCACUUGGAGGCAAUUUGGUAGCUACCCGCCAUGAAGGAGAACGUUCCCA
.......((.(((((((((......((((((((..((((((.......)))).))...))))))))..((.(((.........))).)).)))))).))).))......... ( -32.00)
>DroSec_CAF1 24924 112 - 1
ACCCCCAUCACCUCAUGGUAUUUACGUGGCUGAUCCACCAACAAAUCCUUGGCUGCACUCAGCCACUUGGAUGCUAAUUGGUAGCUACCCGCUUUGAAGGAGAACAUUCCCA
....((.(((((...(((((((((.((((((((..((((((.......)))).))...)))))))).)))))))))...)))(((.....)))..)).))............ ( -33.30)
>DroSim_CAF1 24733 112 - 1
ACCCCCAUCACCUCAUGGUAUUUACGUGGCUGAUCCACCAACAAAUCCUUGGCUGCACUCAGCCACUUGGAUGCUAAUUGGUAGCUACCCGCCUUGAAGGAGAACGUUCCCA
....((.(((((...(((((((((.((((((((..((((((.......)))).))...)))))))).)))))))))...))).((.....))...)).))............ ( -32.40)
>DroEre_CAF1 28557 112 - 1
ACCCCAAUCACCUCAUGGUAUUUACGUGGCUGUUCCACCAACAAAUCCUUGGCUGCACUUAGCCACUUGGAUGCUAUUUGGUAGCUGCCCGAAUUGAAGGACAACGCUGCCA
..............((((((((((.(((((((...((((((.......)))).))....))))))).)))))))))).(((((((((.((........)).))..))))))) ( -35.30)
>DroYak_CAF1 25999 112 - 1
ACCCCGAUCACUUCAUGGUAUCUACGUGGCUGAUCCACCAGCAAAUCCUCGGCUGCACUCAGCCACUUGGAUGCUAUUGGGUAGCUACCCGCCUUGAAGGAGAACGUUCCCA
....((.((.((((((((((((((.((((((((.....((((.........))))...)))))))).)))))))))..((((....))))....)))))..)).))...... ( -41.10)
>DroPer_CAF1 35594 112 - 1
GCCCCCAGCUCAUCGUAGUACUCCAGAGGUUGCUCCUCCAUCAGAUCUUGGGACAGGGUCAGCCACUUGAUGGCUGUCUGGUAGUCGGCUACGUGGAAGUAGAACUUCCCCA
.............((((((((((((((....((((.((((........))))...))))((((((.....))))))))))).)))..)))))).(((((.....)))))... ( -35.00)
>consensus
ACCCCCAUCACCUCAUGGUAUUUACGUGGCUGAUCCACCAACAAAUCCUUGGCUGCACUCAGCCACUUGGAUGCUAUUUGGUAGCUACCCGCCUUGAAGGAGAACGUUCCCA
.........(((..((((((((((.((((((((..((((((.......)))).))...)))))))).))))))))))..)))................((.(......))). (-21.35 = -22.75 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:27 2006