Locus 9896

Sequence ID 3R_DroMel_CAF1
Location 26,430,112 – 26,430,210
Length 98
Max. P 0.776816
window15785

overview

Window 5

Location 26,430,112 – 26,430,210
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 78.78
Mean single sequence MFE -27.23
Consensus MFE -17.94
Energy contribution -18.47
Covariance contribution 0.53
Combinations/Pair 1.25
Mean z-score -1.57
Structure conservation index 0.66
SVM decision value 0.55
SVM RNA-class probability 0.776816
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26430112 98 - 27905053
AAAACUGUGGAGAGGAUUGCCCAAGUACUCCUCUUCUCUACCUUUCGCAGAGUGCAAAGGCUGUCUUAGUUCCUGGGCUAGUCUGUUAUAGAAAAUAU
....((((((((((((.(((....))).))))))))..........(((((.(((..((((((...)))..)))..)).).))))).))))....... ( -26.00)
>DroSec_CAF1 22513 98 - 1
AAAACUGUGGAGAGGAUUGCCCAAGUACUCCUCUUCCCUACCUUUCGCAGCCUGCAACGGUUGUCUUAGUUCCAGAGCAAUUCUGGUGUAGAAAAUAU
........((((((((.(((....))).)))))))).((((((...((((((......))))))...))..((((((...)))))).))))....... ( -28.60)
>DroSim_CAF1 22329 98 - 1
AAAACUGUGGAGAGGAUUGCCCAAGUACUCCUCUUCCUUACCUUUCGCAGCCUGCAAAGGUUGUCUUAGUUCCUGAGCAAUUCUGGUGUAGAAAAUAU
........((((((((.(((....))).))))))))((((((....(((((((....)))))))(((((...))))).......)))).))....... ( -27.30)
>DroEre_CAF1 26018 98 - 1
AAAACUGUGGAGGGGAUUGCCCAGGUACUCCUCUUCUCUGCCUUUCGCAGCCUCCAAGGGCUGCCUUAACUCUUGAGCAAGUCUGUUAUAAAAAAGUC
......(.((((((((.(((....))).)))))))).)...((((.(((((((....)))))))..((((.(((....)))...))))....)))).. ( -29.00)
>DroYak_CAF1 23448 97 - 1
AAAGCUGUGGAGGGGAUUGCCCAGGUACUCCUCUUCUCUGCCCUUCGCAGCCUCCAAAGGCUGCCUUAACUCCUGAGCAAGUCUGUGAUAGAGAAUU-
...((.(.((((((((.(((....))).)))))))).).)).....(((((((....))))))).....(((....(((....)))....)))....- ( -33.40)
>DroAna_CAF1 22334 98 - 1
AAAACUGUGCAAAGGAUUGGAUAGAUAUUCCUCUUCAAUGCCCUUUGCUGCGUUCAAGGGCUCUCGAAUUUCUUUGACUAUUCUGUUAACCAAAUUAG
......(((((((((((((((.((......)).))))))..))))))).))(((....))).....(((((..(((((......)))))..))))).. ( -19.10)
>consensus
AAAACUGUGGAGAGGAUUGCCCAAGUACUCCUCUUCUCUACCUUUCGCAGCCUGCAAAGGCUGUCUUAGUUCCUGAGCAAGUCUGUUAUAGAAAAUAU
......((((((((((.(((....))).))))))))..........(((((((....)))))))............)).................... (-17.94 = -18.47 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:27 2006