Locus 9895

Sequence ID 3R_DroMel_CAF1
Location 26,424,409 – 26,424,502
Length 93
Max. P 0.701126
window15784

overview

Window 4

Location 26,424,409 – 26,424,502
Length 93
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 89.18
Mean single sequence MFE -27.22
Consensus MFE -22.66
Energy contribution -23.22
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -1.95
Structure conservation index 0.83
SVM decision value 0.35
SVM RNA-class probability 0.701126
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26424409 93 + 27905053
UGGUAUC--UUCCUCCAGAUUACCGCGUGGGCAGGAAUCUGGCCAGGACUUUGCUUCAGUACUAUCGCUUCAUUAACAUCCUGCCCAUGCCGAUU
.((((((--(......))).))))((((((((((((((..(((..(((((.......))).))...)))..)).....))))))))))))..... ( -30.20)
>DroSec_CAF1 16669 93 + 1
UGGUUUC--UUACUUCAGAUUACCGCGUUGGCAGGAAUCUGGCCAGGACUUUGCUGCAGUACUAUCGCUUCAUCAACAUCCUGCCCAUGCCGAUU
.(((.((--(......)))..)))..(((((((......(((.(((((..(((.((.(((......))).)).)))..))))).)))))))))). ( -26.20)
>DroSim_CAF1 16320 93 + 1
UCGUACC--CUCCUCCAGAUUACCGCGUGGGCAGGAAUCUGGCCAGGACUCUGCUGCAGUACUAUCGCUUCAUCAACAUCCUGCCCAUGCCGAUU
.......--.............(.((((((((((((....(((.((....)))))(.(((......))).).......)))))))))))).)... ( -27.40)
>DroEre_CAF1 19421 95 + 1
AGGUACCACUUCCUCCAGAUUACCGCGUGGGCAGGAAUCUGGCCAGGACUCUGCUGCAGUACUACCGCUUCAUCAACAUCCUGCCCAUGCCGAUU
.((((...((......))..))))((((((((((((....(((.((....)))))((.(.....).))..........))))))))))))..... ( -30.20)
>DroYak_CAF1 17023 93 + 1
UAGUAUC--UCCCUGCAGAUUACCGCGUGGGCAGGAAUCUGGCCAGGACUCUGCUGCAGUACUACCGCUUCAUCAACAUCCUGCCCAUGCCGAUU
..(((((--(......))).))).((((((((((((....(((.((....)))))((.(.....).))..........))))))))))))..... ( -28.70)
>DroAna_CAF1 16933 93 + 1
CAUUACU--UCUUUUCAGAUUACCGGGUUGGCAGAAACCUGGCCAGGACCCUGCUGCAGUACUACCGCUUCAUCAACAUCCUGCCCAUGCCCAUU
.......--...............((((.(((((...(((....)))....((.((.(((......))).)).)).....)))))...))))... ( -20.60)
>consensus
UGGUACC__UUCCUCCAGAUUACCGCGUGGGCAGGAAUCUGGCCAGGACUCUGCUGCAGUACUACCGCUUCAUCAACAUCCUGCCCAUGCCGAUU
........................((((((((((((.(((....)))....((.((.(((......))).)).))...))))))))))))..... (-22.66 = -23.22 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:26 2006