Locus 9892

Sequence ID 3R_DroMel_CAF1
Location 26,411,964 – 26,412,084
Length 120
Max. P 0.690212
window15779

overview

Window 9

Location 26,411,964 – 26,412,084
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.56
Mean single sequence MFE -45.07
Consensus MFE -23.14
Energy contribution -25.37
Covariance contribution 2.23
Combinations/Pair 1.40
Mean z-score -1.93
Structure conservation index 0.51
SVM decision value 0.33
SVM RNA-class probability 0.690212
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26411964 120 - 27905053
UCAGCUGGCCGGACUUCAUCUUGGGAAUCGUCUGCAUUACUCUGCUCCUGAGCCUGAGAGCCCUGGCCAGUUGUACCCUGGGUCCCAAGGAGGGAAAAACCACAGCGCAAAAGCUUCUGA
.(((((((((((......(((..((..(((...(((......)))...))).))..)))...))))))))))).....(((.((((.....))))....)))(((.((....))..))). ( -42.60)
>DroVir_CAF1 8155 120 - 1
UUAGCUGGCCGGACUUUGGACUGGGCCUCAUCUGUAUUGUAAUGCUGCUCAGCCUACGCGCCCUGGCCAGCUGCAGUGUGGGACCCAAACAGGACAAAUCCACCUGCCAAAAGCUGCUCA
..((((((((((.....((.((((((..(((..........)))..))))))))........))))))))))(((((.(((........((((.........)))))))...)))))... ( -42.12)
>DroPse_CAF1 7026 120 - 1
UCAGCUGGCCGGACUUUAUCCUCGGCCUCAUUUGCAUCACACUGCUGCUCAGCUUGCGCGCCCUCGCCAGCUGCAGCGUCGGCCCCAAGGAGGGCAAGUCCUCCGGCCAGUCGCUCCUCA
...((((((((((.....((((.((((......(((......))).((((((((.(((......))).))))).)))...))))...))))(((....)))))))))))))......... ( -51.10)
>DroMoj_CAF1 4156 120 - 1
UCAGCUGGCCGGACUUCGGACUGGGCAUCACCUGCAUCGUUCUCCUGCUCAGCCUGCGCGCCCUGGCCAGCUGCAGCGUGGGACCCAAGCAGGGCAAGUCCACCUGCCAGCAGCUCCUCA
...((((((.((.(....)..(((((....(((((...(.((((.((((((((.((.((......)))))))).)))).)))).)...)))))....))))))).))))))......... ( -50.50)
>DroAna_CAF1 4708 120 - 1
UCAGCUGGCCAGACUUUAUCCUAGGACUCAUCUGCAUCACACUCCUGCUAAGUCUGAGAGCUUUGGCCAGUUUCAGUUUGGGUCCCAAGGAGGGCAAGUCCACAUCCCAAAAAUUAUUUA
..(((((((((((((((......(((((.....(((.........)))..))))).)))).)))))))))))....(((((((((...)))(((....)))....))))))......... ( -34.40)
>DroPer_CAF1 7303 120 - 1
UCAGCUGGCCGGACUUUAUCCUCGGCCUCAUUUGCAUCACACUGCUGCUCAGCCUGCGCGCCCUCGCCAGCUGCAGCGUCGGCCCCAAGGAGGGCAAGUCCUCCGGCCAGGCGCUCCUCA
.((((((((.(((.....)))..(((.......(((......))).((.(.....).)))))...)))))))).((((((((((....((((((....)))))))))).))))))..... ( -49.70)
>consensus
UCAGCUGGCCGGACUUUAUCCUGGGCCUCAUCUGCAUCACACUGCUGCUCAGCCUGCGCGCCCUGGCCAGCUGCAGCGUGGGACCCAAGGAGGGCAAGUCCACCGGCCAAAAGCUCCUCA
.(((((((((((......((.(((((.......(((......)))......))))).))...)))))))))))....(((((((((.....)))...))))))................. (-23.14 = -25.37 +   2.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:21 2006