Locus 9891

Sequence ID	3R_DroMel_CAF1
Location	26,401,709 – 26,401,801
Length	92
Max. P	0.995368

overview

Window 8

Location	26,401,709 – 26,401,801
Length	92
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	97.19
Mean single sequence MFE	-15.36
Consensus MFE	-14.26
Energy contribution	-14.54
Covariance contribution	0.28
Combinations/Pair	1.11
Mean z-score	-1.97
Structure conservation index	0.93
SVM decision value	2.57
SVM RNA-class probability	0.995368
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26401709 92 + 27905053
AACUCGCAAGAAUUGCCAAAUAACCAAG-CCCCAAGUAGCAACCAGCAUUCUGCUAUAUAUAUUGCCUCGAUAUAUAUGGUCUAUAACUAGCU
...((....))...............((-(.....((((..((((((.....)))((((((((((...))))))))))))))))).....))) ( -16.50)
>DroSec_CAF1 131023 92 + 1
AACUCGCAAGAAUUGCCAAAUAACCAAG-CCCCAACUAGCAACCAGCAUUCUGCUAUAUAUAUUGCCUCGAUAUAUAUGGUCUAUAACUAGCU
...((....))...............((-(........((.....)).....(((((((((((((...))))))))))))).........))) ( -16.00)
>DroSim_CAF1 128756 92 + 1
AACUCGCAAGAAUUGCCAAAUAACCAAG-CCCCAACUAGCAACCAGCAUUCUGCUAUAUAUAUCGCCUCGAUAUAUAUGGUCUAUAACUAGCU
...((....))...............((-(........((.....)).....(((((((((((((...))))))))))))).........))) ( -18.10)
>DroEre_CAF1 135571 92 + 1
AACUCGCAAGAAUUGCCAAAUAACCAAG-CCCCAACUAGCAACCAGCAUUCUGCUAUAUAUAUAGCCUCGAUAUAUAUAGUCUAUAACUAGCU
...((....))...............((-(........((.....)).....(((((((((((.......))))))))))).........))) ( -14.00)
>DroYak_CAF1 130320 93 + 1
AACUCGCAAGAAUUGCCAAAUAACCAAGACCCCAACUAGCAACCAGCAUUCUGCUAUAUAUAGAGCCUCGAUAUAUAUAGUCUAUAACUAGCU
...((....))...((......................((.....)).....((((((((((.........)))))))))).........)). ( -12.20)
>consensus
AACUCGCAAGAAUUGCCAAAUAACCAAG_CCCCAACUAGCAACCAGCAUUCUGCUAUAUAUAUAGCCUCGAUAUAUAUGGUCUAUAACUAGCU
...((....))...((......................((.....)).....(((((((((((((...))))))))))))).........)). (-14.26 = -14.54 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:20 2006