Locus 9889

Sequence ID 3R_DroMel_CAF1
Location 26,398,363 – 26,398,483
Length 120
Max. P 0.613830
window15775

overview

Window 5

Location 26,398,363 – 26,398,483
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.78
Mean single sequence MFE -36.58
Consensus MFE -33.10
Energy contribution -32.05
Covariance contribution -1.05
Combinations/Pair 1.20
Mean z-score -1.22
Structure conservation index 0.90
SVM decision value 0.16
SVM RNA-class probability 0.613830
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26398363 120 - 27905053
UCUCGACAUUUAAUACUCUCAGGGUUUUGCUCUUCUCUAUGGCCGCGGCUAACAGGAGGGCUGUCUUGUCGGUGAGGCCCACAUUUGUUAGCGAGAGGACUUCCAAAUGUUCGUUCUGAG
.................(((((..(...((((((((...((((....))))..)))))))).(((((.(((.(((.(........).))).))).)))))............)..))))) ( -34.50)
>DroVir_CAF1 122968 120 - 1
UUUCAACAUUUAAUACUCUCAGGGUUUUGCUUUUCUCGAUCGCUUCGGCGAGCAGGAGAGCUGUCUUAUCGGUCAGGCCGACGUUUGUCAGCGAUAGAACUUCCAAAUGUUCAUUCUGAG
.................((((((((...((((((((...((((....))))..))))))))((((...((((.....)))).((......))))))((((........)))))))))))) ( -36.00)
>DroGri_CAF1 115743 120 - 1
UUUCAACAUUUAAUACUCUCAGGGUUUUGCUUUUCUCGAUCGCUUCGGCGAGCAGGAGAGCUGUCUUAUCGGUCAGGCCGACGUUUGUCAGCGAUAGAACUUCCAAAUGUUCGUUCUGAG
.................(((((..(...((((((((...((((....))))..))))))))((((...((((.....)))).((......))))))((((........)))))..))))) ( -35.70)
>DroWil_CAF1 130508 120 - 1
UCUCAACAUUUAAUACUCUCAGGGUUUUGCUUUUCUCGAUCGCCUCGGCGAGCAGGAGAGCUGUCCUAUCGGUCAGGCCGACAUUUGUCAGCGAUAGAACUUCCAGAUGUUCGUUCUGAG
.....................(((....((((((((...((((....))))..))))))))...))).....((((..(((((((((..((........))..)))))).)))..)))). ( -35.50)
>DroMoj_CAF1 134166 120 - 1
UUUCCACAUUUAAUACUCUCAGGGUUUUGCUUUUCUCGAUCGCUUCGGCGAGCAGGAGAGCUGUCUUAUCGGUCAGUCCGACGUUUGUCAGCGAUAGAACUUCCAAAUGUUCAUUCUGAG
.................((((((((...((((((((...((((....))))..))))))))((((...((((.....)))).((......))))))((((........)))))))))))) ( -35.30)
>DroAna_CAF1 143154 120 - 1
UCUCGACGUUUAAUACUCUCAGGGUUUUGCUCUUCUCGAUAGCCUCCGCCAGCAGGAGGGCUGUCUUGUCGGUGAGGCCGACAUUUGUCAGCGAGAGGACUUCCAGAUGUUCAUUCUGAG
.................((((((((((((.(((((((.....(((((.......)))))((((.(.((((((.....))))))...).)))))))))))....)))).....)))))))) ( -42.50)
>consensus
UCUCAACAUUUAAUACUCUCAGGGUUUUGCUUUUCUCGAUCGCCUCGGCGAGCAGGAGAGCUGUCUUAUCGGUCAGGCCGACAUUUGUCAGCGAUAGAACUUCCAAAUGUUCAUUCUGAG
.................(((((..(...((((((((...((((....))))..)))))))).......((((.....))))((((((..((........))..))))))...)..))))) (-33.10 = -32.05 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:18 2006