Locus 9888

Sequence ID 3R_DroMel_CAF1
Location 26,396,546 – 26,396,637
Length 91
Max. P 0.749364
window15774

overview

Window 4

Location 26,396,546 – 26,396,637
Length 91
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 83.81
Mean single sequence MFE -27.62
Consensus MFE -21.42
Energy contribution -23.57
Covariance contribution 2.14
Combinations/Pair 1.11
Mean z-score -2.10
Structure conservation index 0.78
SVM decision value 0.47
SVM RNA-class probability 0.749364
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26396546 91 + 27905053
------UUAA-------UGGUCUUAG---UUUUUGUCAGUGUGCCUAAUUUACAUUGGCAACCCUUUGGGCCAACUGGCUGAGUGACUCGACUUAAGUUGGCCUGAA
------....-------.........---...(((((((((((.......)))))))))))....(..((((((((...(((((......)))))))))))))..). ( -29.90)
>DroSec_CAF1 125849 91 + 1
------UUCA-------UGGCCUUAG---UUUUUGUCGGUGUGCCUAAUUUACAUUGGCAACUCUUUGGGCCAACUGGCUGAGUGACUCGACUUAAGUUGGCCUGAA
------.(((-------((((((.((---...(((((((((((.......)))))))))))..))..)))))).(..(((((((......)))).)))..)..))). ( -29.50)
>DroSim_CAF1 123484 91 + 1
------UUCA-------UGGCCUUAG---UUUUUGUCGGUGUGCCUAAUUUACAUUGGCAACUCUUUGGGCCAACUGGCUGAGUGACUCGACUUAAGUUGGCCUGAA
------.(((-------((((((.((---...(((((((((((.......)))))))))))..))..)))))).(..(((((((......)))).)))..)..))). ( -29.50)
>DroEre_CAF1 130430 91 + 1
------UUCA-------GUGCCUCAG---UUUUUGUCGGUGUGCCUAAUUUACAUUGGCAACUCUUUGGGCCAACUGGCUGAGUGACUCGACUUAAGUUGGCCCGAA
------....-------.........---...(((((((((((.......)))))))))))....(((((((((((...(((((......)))))))))))))))). ( -31.60)
>DroYak_CAF1 125072 91 + 1
------UUCA-------UUGCCUUAG---UUUUUGUCGGUGUGCCUAAUUUACAUUGGCAACUCUUUGGGCCAACUGGCUGAGUGACUCGACUUAAGUUGGCCUGAA
------....-------.........---...(((((((((((.......)))))))))))....(..((((((((...(((((......)))))))))))))..). ( -29.10)
>DroAna_CAF1 141359 100 + 1
CUAACCUUUAGGGCUUGUUUGCUAAGAUUUUUCUCUCCGUGUCCCUAAUUUACAUUGCCGACUCUUCAGGCCAACUGGCUCAGUGACUCGACUUUACUCG-------
.......((((((......(((..(((......)))..))).))))))..........(((.((....((((....))))....)).)))..........------- ( -16.10)
>consensus
______UUCA_______UGGCCUUAG___UUUUUGUCGGUGUGCCUAAUUUACAUUGGCAACUCUUUGGGCCAACUGGCUGAGUGACUCGACUUAAGUUGGCCUGAA
................................(((((((((((.......)))))))))))....(((((((((((...(((((......)))))))))))))))). (-21.42 = -23.57 +   2.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:17 2006