Locus 9886

Sequence ID 3R_DroMel_CAF1
Location 26,392,127 – 26,392,232
Length 105
Max. P 0.619637
window15771

overview

Window 1

Location 26,392,127 – 26,392,232
Length 105
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 92.66
Mean single sequence MFE -28.38
Consensus MFE -21.66
Energy contribution -22.86
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.76
SVM decision value 0.18
SVM RNA-class probability 0.619637
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26392127 105 + 27905053
UCUGGCGACAAAGAUGGUUGCAUGCGAUGGUUGCCACACUUUGUGGCUAUCCGUUUUUUUUUUUUCUUAUCCGGAAAAUUACCUCACGGUGGAAAUUCUGA-UUCA
....(((((.......)))))....(((((..(((((.....)))))...)))))................(((((..(((((....)))))...))))).-.... ( -26.40)
>DroSec_CAF1 121431 103 + 1
UCUGGCGACAAAGAUGGUUGCAUGCGAUUGUUGCCACACUUUGUGGCUUUCCGUUUUU--UUUUUCUGAUCCGGAAAAUUACCUCACCGUGGAAAUUCUGG-UUCA
...(((.((((((.((((.(((......))).))))..)))))).)))..........--.......((.(((((..(((.((.......)).))))))))-.)). ( -26.90)
>DroSim_CAF1 119036 102 + 1
UCUGGCGACAAAGAUGGUUGCAUGCGAUUGUUGCCACACUUUGUGGCUUUCCGUUUUU---UUUUCUGAUCCGGAAAAUUACCUCACGGUGGAAAUUCUGG-UUCA
...(((.((((((.((((.(((......))).))))..)))))).)))..........---......((.((((((..(((((....)))))...))))))-.)). ( -30.40)
>DroEre_CAF1 125888 98 + 1
UCUGGCGACAAAGAUGGUUGCAUGCGAUUGUUGCCACACUUUGUGGCUUUCCGUUU-------UUCUGAUCCGGAAAAUUUCCUCACGGUGGAAAUUCUGA-UUCA
...(((.((((((.((((.(((......))).))))..)))))).)))(((((..(-------(...))..)))))(((((((.......)))))))....-.... ( -28.40)
>DroYak_CAF1 120533 100 + 1
UCUGGCGACAAAGAUGGUUGCAUGCGAUUGUUGCCACACUUUGUGGCUUUCCGUUU------UUUCUGAUCCGGAAAAUUUCCUCACGAUGGAAAUUCUGAAUCCA
...(((.((((((.((((.(((......))).))))..)))))).)))(((((..(------(....))..)))))(((((((.......)))))))......... ( -29.80)
>consensus
UCUGGCGACAAAGAUGGUUGCAUGCGAUUGUUGCCACACUUUGUGGCUUUCCGUUUUU___UUUUCUGAUCCGGAAAAUUACCUCACGGUGGAAAUUCUGA_UUCA
((((((.((((((.((((.(((......))).))))..)))))).)))..((((.......((((((.....)))))).......)))).)))............. (-21.66 = -22.86 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:14 2006